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1ELV
Asym. Unit
Info
Asym.Unit (62 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN COMPLEMENT C1S PROTEASE
Authors
:
C. Gaboriaud, V. Rossi, I. Bally, G. Arlaud, J. -C. Fontecilla-Camps
Date
:
14 Mar 00 (Deposition) - 14 Mar 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Trypsin-Like Serin Protease, Ccp (Or Sushi Or Scr)Module, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Gaboriaud, V. Rossi, I. Bally, G. J. Arlaud, J. C. Fontecilla-Camps
Crystal Structure Of The Catalytic Domain Of Human Complement C1S: A Serine Protease With A Handle.
Embo J. V. 19 1755 2000
[
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3a: 2-(2-HYDROXY-1,1-DIHYDROXYMETHYL-E... (NESa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NES
1
Ligand/Ion
2-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-ETHANESULFONIC ACID
4
SO4
2
Ligand/Ion
SULFATE ION
[
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]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: CAT (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:391 , SER A:393 , PRO A:401 , NAG A:1002 , FUC A:1003
BINDING SITE FOR RESIDUE NAG A 1001
2
AC2
SOFTWARE
HOH A:86 , HOH A:197 , HOH A:246 , HOH A:252 , HOH A:319 , GLY A:400 , PRO A:401 , NAG A:1001
BINDING SITE FOR RESIDUE NAG A 1002
3
AC3
SOFTWARE
HOH A:8 , HOH A:9 , HOH A:129 , HOH A:224 , HIS A:387 , ALA A:389 , PRO A:443 , TRP A:444 , NAG A:1001
BINDING SITE FOR RESIDUE FUC A 1003
4
AC4
SOFTWARE
HOH A:9 , HOH A:47 , HOH A:139 , HOH A:209 , HIS A:460 , LYS A:614 , GLY A:615 , SER A:617
BINDING SITE FOR RESIDUE SO4 A 2001
5
AC5
SOFTWARE
HOH A:34 , ARG A:561 , ALA A:564 , VAL A:565 , ARG A:566 , LYS A:568
BINDING SITE FOR RESIDUE SO4 A 2002
6
AC6
SOFTWARE
HOH A:5 , HOH A:53 , HOH A:175 , HOH A:214 , HIS A:496 , ASN A:513 , ASN A:600 , ASN A:655 , TYR A:656 , ASP A:658 , TRP A:659
BINDING SITE FOR RESIDUE NES A 2003
7
CAT
AUTHOR
HIS A:460 , ASP A:514 , SER A:617
THE CATALYTIC TRIAD IS: HIS A460 (57), ASP A514 (102), SER A617 (195) (RESIDUE NUMBERS IN THE REFERENCE CHYMOTRYPSINOGEN MOLECULE).
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014565 (R368H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014565
R
383
H
C1S_HUMAN
Polymorphism
20573
A
R
368
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: SUSHI (-|A:343-408)
2: TRYPSIN_DOM (A:423-665)
3: TRYPSIN_SER (A:611-622)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
C1S_HUMAN
292-356
357-423
1
-
A:343-408
2
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
C1S_HUMAN
438-680
1
A:423-665
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
C1S_HUMAN
626-637
1
A:611-622
[
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Exons
(3, 3)
Info
All Exons
Exon 1.13c (A:342-384 (gaps))
Exon 1.15b (A:384-409)
Exon 1.17c (A:409-668 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.12j/1.13c
2: Boundary 1.13c/1.15b
3: Boundary 1.15b/1.17c
4: Boundary 1.17c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5b
ENST00000360817
5b
ENSE00001554821
chr12:
7167980-7168181
202
C1S_HUMAN
-
0
0
-
-
1.6d
ENST00000360817
6d
ENSE00001805598
chr12:
7169143-7169221
79
C1S_HUMAN
1-2
2
0
-
-
1.7b
ENST00000360817
7b
ENSE00001609294
chr12:
7169779-7169986
208
C1S_HUMAN
2-71
70
0
-
-
1.8c
ENST00000360817
8c
ENSE00001307751
chr12:
7170194-7170371
178
C1S_HUMAN
72-131
60
0
-
-
1.10e
ENST00000360817
10e
ENSE00001327036
chr12:
7171571-7171696
126
C1S_HUMAN
131-173
43
0
-
-
1.11b
ENST00000360817
11b
ENSE00001308911
chr12:
7172404-7172603
200
C1S_HUMAN
173-239
67
0
-
-
1.12b
ENST00000360817
12b
ENSE00001322783
chr12:
7173121-7173274
154
C1S_HUMAN
240-291
52
0
-
-
1.12g
ENST00000360817
12g
ENSE00001560603
chr12:
7173822-7173937
116
C1S_HUMAN
291-329
39
0
-
-
1.12j
ENST00000360817
12j
ENSE00001319673
chr12:
7174343-7174421
79
C1S_HUMAN
330-356
27
0
-
-
1.13c
ENST00000360817
13c
ENSE00001777929
chr12:
7174947-7175075
129
C1S_HUMAN
356-399
44
1
A:342-384 (gaps)
43
1.15b
ENST00000360817
15b
ENSE00001604953
chr12:
7175760-7175834
75
C1S_HUMAN
399-424
26
1
A:384-409
26
1.17c
ENST00000360817
17c
ENSE00001884879
chr12:
7177159-7178247
1089
C1S_HUMAN
424-688
265
1
A:409-668 (gaps)
260
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1elva1 (A:410-668)
2a: SCOP_d1elva2 (A:342-409)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Complement C1S protease, catalytic domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1elva1
A:410-668
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
Complement C1S protease domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1elva2
A:342-409
[
close SCOP info
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1elvA02 (A:423-436,A:534-655)
1b: CATH_1elvA01 (A:437-532,A:656-664)
2a: CATH_1elvA03 (A:342-409)
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)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
1elvA02
A:423-436,A:534-655
1b
1elvA01
A:437-532,A:656-664
Architecture
:
Ribbon
(789)
Topology
:
Complement Module; domain 1
(62)
Homologous Superfamily
:
Complement Module, domain 1
(60)
Human (Homo sapiens)
(46)
2a
1elvA03
A:342-409
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Chain A
Asymmetric Unit 1
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