PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1ELR
Asym. Unit
Info
Asym.Unit (30 KB)
Biol.Unit 1 (26 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE TPR2A DOMAIN OF HOP IN COMPLEX WITH THE HSP90 PEPTIDE MEEVD
Authors
:
C. Scheufler, A. Brinker, F. U. Hartl, I. Moarefi
Date
:
14 Mar 00 (Deposition) - 26 Apr 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hop, Tpr-Domain, Peptide-Complex, Helical Repeat, Hsp90, Protein Binding, Chaperone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Scheufler, A. Brinker, G. Bourenkov, S. Pegoraro, L. Moroder, H. Bartunik, F. U. Hartl, I. Moarefi
Structure Of Tpr Domain-Peptide Complexes: Critical Elements In The Assembly Of The Hsp70-Hsp90 Multichaperone Machine.
Cell(Cambridge, Mass. ) V. 101 199 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: NICKEL (II) ION (NIa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
NI
1
Ligand/Ion
NICKEL (II) ION
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:14 , HOH A:59 , HOH A:60 , HIS A:247 , HIS A:321 , LYS A:325
BINDING SITE FOR RESIDUE NI A 200
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TPR (-|-|-|A:225-258|A:259-292|A:300-33...)
2: TPR_REGION (-|A:225-349)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPR
PS50005
TPR repeat profile.
STIP1_HUMAN
4-37
38-71
72-105
225-258
259-292
300-333
360-393
394-427
428-461
3
-
-
-
A:225-258
A:259-292
A:300-333
-
-
-
2
TPR_REGION
PS50293
TPR repeat region circular profile.
STIP1_HUMAN
4-105
225-461
1
-
A:225-349
[
close PROSITE info
]
Exons
(5, 5)
Info
All Exons
Exon 1.6 (A:222-224)
Exon 1.7 (A:225-267)
Exon 1.8 (A:267-301)
Exon 1.9 (A:301-341)
Exon 1.10 (A:342-349)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10
6: Boundary 1.10/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000305218
2
ENSE00001303761
chr11:
63953587-63953742
156
STIP1_HUMAN
1-3
3
0
-
-
1.3
ENST00000305218
3
ENSE00001292614
chr11:
63960550-63960759
210
STIP1_HUMAN
4-73
70
0
-
-
1.4
ENST00000305218
4
ENSE00001196235
chr11:
63961661-63961802
142
STIP1_HUMAN
74-121
48
0
-
-
1.5
ENST00000305218
5
ENSE00001196229
chr11:
63961951-63962092
142
STIP1_HUMAN
121-168
48
0
-
-
1.6
ENST00000305218
6
ENSE00001196227
chr11:
63963117-63963285
169
STIP1_HUMAN
168-224
57
1
A:222-224
3
1.7
ENST00000305218
7
ENSE00001139237
chr11:
63964743-63964869
127
STIP1_HUMAN
225-267
43
1
A:225-267
43
1.8
ENST00000305218
8
ENSE00001139229
chr11:
63964965-63965067
103
STIP1_HUMAN
267-301
35
1
A:267-301
35
1.9
ENST00000305218
9
ENSE00001139278
chr11:
63965326-63965446
121
STIP1_HUMAN
301-341
41
1
A:301-341
41
1.10
ENST00000305218
10
ENSE00001310490
chr11:
63967412-63967508
97
STIP1_HUMAN
342-374
33
1
A:342-349
8
1.11
ENST00000305218
11
ENSE00001317889
chr11:
63967641-63967765
125
STIP1_HUMAN
374-415
42
0
-
-
1.12
ENST00000305218
12
ENSE00001169747
chr11:
63970348-63970384
37
STIP1_HUMAN
416-428
13
0
-
-
1.13
ENST00000305218
13
ENSE00001169731
chr11:
63970597-63970700
104
STIP1_HUMAN
428-462
35
0
-
-
1.14
ENST00000305218
14
ENSE00001169722
chr11:
63970922-63971094
173
STIP1_HUMAN
463-520
58
0
-
-
1.15b
ENST00000305218
15b
ENSE00001518832
chr11:
63971526-63972020
495
STIP1_HUMAN
520-543
24
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1elra_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
TPR-like
(83)
Family
:
Tetratricopeptide repeat (TPR)
(47)
Protein domain
:
Hop
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1elra_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1elrA00 (A:222-349)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.10, no name defined]
(42)
Human (Homo sapiens)
(17)
1a
1elrA00
A:222-349
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (30 KB)
Header - Asym.Unit
Biol.Unit 1 (26 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1ELR
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help