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1ELI
Asym. Unit
Info
Asym.Unit (146 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
COMPLEX OF MONOMERIC SARCOSINE OXIDASE WITH THE INHIBITOR PYRROLE-2-CARBOXYLATE
Authors
:
M. A. Wagner, P. Trickey, Z. -W. Chen, F. S. Mathews, M. S. Jorns
Date
:
13 Mar 00 (Deposition) - 06 Dec 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Flavoprotein, Oxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Wagner, P. Trickey, Z. W. Chen, F. S. Mathews, M. S. Jorns
Monomeric Sarcosine Oxidase: 1. Flavin Reactivity And Activ Site Binding Determinants.
Biochemistry V. 39 8813 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 24)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
5a: PYRROLE-2-CARBOXYLATE (PYCa)
5b: PYRROLE-2-CARBOXYLATE (PYCb)
5c: PYRROLE-2-CARBOXYLATE (PYCc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
MSE
14
Mod. Amino Acid
SELENOMETHIONINE
4
PO4
3
Ligand/Ion
PHOSPHATE ION
5
PYC
3
Ligand/Ion
PYRROLE-2-CARBOXYLATE
[
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]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:81 , ASN A:151 , ARG A:154 , HOH A:901
BINDING SITE FOR RESIDUE PO4 A 803
02
AC2
SOFTWARE
THR A:318 , PHE A:342 , SER A:343 , GLY A:344 , FAD A:400
BINDING SITE FOR RESIDUE CL A 804
03
AC3
SOFTWARE
HIS B:53 , LEU B:113 , THR B:114 , VAL B:115 , GLU B:141 , PRO B:142 , ASN B:143 , SER B:144 , HOH B:911 , HOH B:1129
BINDING SITE FOR RESIDUE PO4 B 812
04
AC4
SOFTWARE
HIS B:81 , ASN B:151 , ARG B:154 , HOH B:824 , HOH B:1115
BINDING SITE FOR RESIDUE PO4 B 813
05
AC5
SOFTWARE
TYR B:317 , THR B:318 , GLY B:344 , FAD B:400 , HOH B:872
BINDING SITE FOR RESIDUE CL B 814
06
AC6
SOFTWARE
GLY A:10 , GLY A:12 , SER A:13 , MSE A:14 , VAL A:32 , ASP A:33 , ALA A:34 , PHE A:35 , HIS A:39 , GLY A:42 , SER A:43 , HIS A:44 , ARG A:49 , ILE A:50 , THR A:171 , ARG A:172 , VAL A:173 , SER A:200 , MSE A:201 , GLY A:202 , TRP A:204 , LEU A:208 , VAL A:225 , TYR A:254 , CYS A:315 , MSE A:316 , TYR A:317 , PHE A:342 , GLY A:344 , HIS A:345 , GLY A:346 , PHE A:347 , LYS A:348 , PYC A:801 , CL A:804 , HOH A:814 , HOH A:820 , HOH A:825 , HOH A:858 , HOH A:889 , HOH A:934
BINDING SITE FOR RESIDUE FAD A 400
07
AC7
SOFTWARE
ILE A:50 , ARG A:52 , MSE A:245 , TYR A:254 , HIS A:269 , TYR A:317 , GLY A:344 , HIS A:345 , LYS A:348 , FAD A:400
BINDING SITE FOR RESIDUE PYC A 801
08
AC8
SOFTWARE
GLY B:10 , GLY B:12 , SER B:13 , MSE B:14 , VAL B:32 , ASP B:33 , ALA B:34 , PHE B:35 , HIS B:39 , GLY B:42 , SER B:43 , HIS B:44 , ARG B:49 , ILE B:50 , THR B:171 , ARG B:172 , VAL B:173 , SER B:200 , MSE B:201 , GLY B:202 , TRP B:204 , LEU B:208 , VAL B:225 , TYR B:254 , CYS B:315 , MSE B:316 , TYR B:317 , PHE B:342 , GLY B:344 , HIS B:345 , GLY B:346 , PHE B:347 , LYS B:348 , PYC B:811 , CL B:814 , HOH B:821 , HOH B:823 , HOH B:826 , HOH B:827 , HOH B:868
BINDING SITE FOR RESIDUE FAD B 400
09
AC9
SOFTWARE
ILE B:50 , ARG B:52 , MSE B:245 , TYR B:254 , HIS B:269 , TYR B:317 , GLY B:344 , HIS B:345 , LYS B:348 , FAD B:400
BINDING SITE FOR RESIDUE PYC B 811
10
BC1
SOFTWARE
PRO B:217 , GLN B:219 , TYR B:221 , LYS B:319 , THR B:320 , LEU B:321 , HOH B:936 , HOH B:1021
BINDING SITE FOR RESIDUE PYC B 815
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1elia2 (A:218-321)
1b: SCOP_d1elib2 (B:218-321)
2a: SCOP_d1elia1 (A:1-217,A:322-385)
2b: SCOP_d1elib1 (B:1-217,B:322-385)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
D-aminoacid oxidase-like
(29)
Protein domain
:
Sarcosine oxidase
(16)
Bacillus sp., strain b0618 [TaxId: 1409]
(16)
1a
d1elia2
A:218-321
1b
d1elib2
B:218-321
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
Sarcosine oxidase
(16)
Bacillus sp., strain b0618 [TaxId: 1409]
(16)
2a
d1elia1
A:1-217,A:322-385
2b
d1elib1
B:1-217,B:322-385
[
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]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1eliA02 (A:60-145,A:213-321)
1b: CATH_1eliB02 (B:60-145,B:213-321)
2a: CATH_1eliA01 (A:1-59,A:149-212,A:326-378)
2b: CATH_1eliB01 (B:1-59,B:149-212,B:326-378)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-Amino Acid Oxidase; Chain A, domain 2
(80)
Homologous Superfamily
:
D-Amino Acid Oxidase, subunit A, domain 2
(80)
B-0618 (Bacillus sp)
(11)
1a
1eliA02
A:60-145,A:213-321
1b
1eliB02
B:60-145,B:213-321
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
B-0618 (Bacillus sp)
(11)
2a
1eliA01
A:1-59,A:149-212,A:326-378
2b
1eliB01
B:1-59,B:149-212,B:326-378
[
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (146 KB)
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