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1EI6
Asym. Unit
Info
Asym.Unit (264 KB)
Biol.Unit 1 (131 KB)
Biol.Unit 2 (132 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHOSPHONOACETATE HYDROLASE COMPLEXED WITH PHOSPHONOFORMATE
Authors
:
H. M. Holden, M. M. Benning, D. Dunaway-Mariano, A. D. Kim
Date
:
24 Feb 00 (Deposition) - 25 Nov 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Phosphonoacetate, Hydrolase, Zinc, Crystal Structure
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
H. M. Holden, M. M. Benning, D. Dunaway-Mariano, A. D. Kim
Crystal Structure Of Phosphonoacetate Hydrolase Complexed With Phosphonoformate
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: PHOSPHONOFORMIC ACID (PPFa)
1b: PHOSPHONOFORMIC ACID (PPFb)
1c: PHOSPHONOFORMIC ACID (PPFc)
2a: L(+)-TARTARIC ACID (TLAa)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
PPF
3
Ligand/Ion
PHOSPHONOFORMIC ACID
2
TLA
1
Ligand/Ion
L(+)-TARTARIC ACID
3
ZN
8
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:25 , THR A:64 , ASP A:202 , ASP A:241 , HIS A:242 , PPF A:410
BINDING SITE FOR RESIDUE ZN A 408
02
AC2
SOFTWARE
ASP A:202 , HIS A:206 , HIS A:368 , PPF A:410
BINDING SITE FOR RESIDUE ZN A 409
03
AC3
SOFTWARE
ASP B:25 , THR B:64 , ASP B:241 , HIS B:242 , TLA B:411
BINDING SITE FOR RESIDUE ZN B 408
04
AC4
SOFTWARE
ASP B:202 , HIS B:206 , HIS B:368 , TLA B:411
BINDING SITE FOR RESIDUE ZN B 409
05
AC5
SOFTWARE
ASP C:25 , THR C:64 , ASP C:241 , HIS C:242 , PPF C:413
BINDING SITE FOR RESIDUE ZN C 408
06
AC6
SOFTWARE
ASP C:202 , HIS C:206 , HIS C:368 , PPF C:413
BINDING SITE FOR RESIDUE ZN C 409
07
AC7
SOFTWARE
ASP D:25 , THR D:64 , ASP D:241 , HIS D:242
BINDING SITE FOR RESIDUE ZN D 408
08
AC8
SOFTWARE
ASP D:202 , HIS D:206 , HIS D:368 , PPF D:412
BINDING SITE FOR RESIDUE ZN D 409
09
AC9
SOFTWARE
PHE B:63 , THR B:64 , ASN B:85 , ASP B:202 , HIS B:206 , ILE B:278 , HIS B:285 , HIS B:286 , HIS B:368 , ZN B:408 , ZN B:409 , HOH B:590
BINDING SITE FOR RESIDUE TLA B 411
10
BC1
SOFTWARE
THR A:64 , ASP A:202 , HIS A:206 , HIS A:242 , ILE A:278 , HIS A:368 , ZN A:408 , ZN A:409 , HOH A:470
BINDING SITE FOR RESIDUE PPF A 410
11
BC2
SOFTWARE
THR D:64 , ASP D:202 , HIS D:206 , ILE D:278 , HIS D:285 , HIS D:286 , HIS D:368 , ZN D:409 , HOH D:703 , HOH D:879
BINDING SITE FOR RESIDUE PPF D 412
12
BC3
SOFTWARE
ASP C:25 , PHE C:63 , THR C:64 , ASP C:202 , HIS C:206 , HIS C:242 , ILE C:278 , HIS C:368 , ZN C:408 , ZN C:409 , HOH C:808 , HOH C:845
BINDING SITE FOR RESIDUE PPF C 413
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1ei6a_ (A:)
1b: SCOP_d1ei6b_ (B:)
1c: SCOP_d1ei6c_ (C:)
1d: SCOP_d1ei6d_ (D:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Alkaline phosphatase-like
(78)
Superfamily
:
Alkaline phosphatase-like
(78)
Family
:
Phosphonoacetate hydrolase
(1)
Protein domain
:
Phosphonoacetate hydrolase
(1)
Pseudomonas fluorescens [TaxId: 294]
(1)
1a
d1ei6a_
A:
1b
d1ei6b_
B:
1c
d1ei6c_
C:
1d
d1ei6d_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1ei6A02 (A:253-363)
1b: CATH_1ei6B02 (B:253-363)
1c: CATH_1ei6C02 (C:253-363)
1d: CATH_1ei6D02 (D:253-363)
2a: CATH_1ei6A01 (A:2-252,A:364-407)
2b: CATH_1ei6B01 (B:2-252,B:364-407)
2c: CATH_1ei6C01 (C:2-252,C:364-407)
2d: CATH_1ei6D01 (D:2-252,D:364-407)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Gyrase A; domain 2
(166)
Homologous Superfamily
:
Domain 2, Phosphonoacetate Hydrolase
(1)
Pseudomonas fluorescens. Organism_taxid: 294. Strain: 23f.
(1)
1a
1ei6A02
A:253-363
1b
1ei6B02
B:253-363
1c
1ei6C02
C:253-363
1d
1ei6D02
D:253-363
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Alkaline Phosphatase, subunit A
(66)
Homologous Superfamily
:
Alkaline Phosphatase, subunit A
(66)
Pseudomonas fluorescens. Organism_taxid: 294. Strain: 23f.
(1)
2a
1ei6A01
A:2-252,A:364-407
2b
1ei6B01
B:2-252,B:364-407
2c
1ei6C01
C:2-252,C:364-407
2d
1ei6D01
D:2-252,D:364-407
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (264 KB)
Header - Asym.Unit
Biol.Unit 1 (131 KB)
Header - Biol.Unit 1
Biol.Unit 2 (132 KB)
Header - Biol.Unit 2
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