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1EHW
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (143 KB)
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(1)
Title
:
HUMAN NUCLEOSIDE DIPHOSPHATE KINASE 4
Authors
:
L. Milon, P. Meyer, M. Chiadmi, A. Munier, M. Johansson, A. Karlsson, I. J. Capeau, J. Janin, M. -L. Lacombe
Date
:
23 Feb 00 (Deposition) - 17 May 00 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Nucleoside Diphosphate Kinase, Nm23, Mitochondrial, Killer-Of-Prune, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Milon, P. Meyer, M. Chiadmi, A. Munier, M. Johansson, A. Karlsson, I. Lascu, J. Capeau, J. Janin, M. L. Lacombe
The Human Nm23-H4 Gene Product Is A Mitochondrial Nucleosid Diphosphate Kinase.
J. Biol. Chem. V. 275 14264 2000
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:111 , ILE A:112 , SER A:113 , ARG A:114 , HOH A:507 , HOH A:510 , PRO B:59 , PHE B:60 , PRO B:62
BINDING SITE FOR RESIDUE SO4 A 160
2
AC2
SOFTWARE
ARG B:88 , THR B:94 , ARG B:105 , HOH B:519 , HOH B:528
BINDING SITE FOR RESIDUE SO4 B 163
3
AC3
SOFTWARE
ARG A:88 , THR A:94 , ARG A:105 , HOH A:525
BINDING SITE FOR RESIDUE SO4 A 164
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: NDP_KINASES (A:115-123,B:115-123)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NDP_KINASES
PS00469
Nucleoside diphosphate kinases active site.
NDKM_HUMAN
148-156
2
A:115-123
B:115-123
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Exons
(5, 10)
Info
All Exons
Exon 1.2d (A:0-2 | B:1-2)
Exon 1.4e (A:3-42 | B:3-42)
Exon 1.4i (A:43-76 | B:43-76)
Exon 1.4j (A:77-114 | B:77-114)
Exon 1.5j (A:114-142 | B:114-142)
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All Exon Boundaries
1: Boundary -/1.2d
2: Boundary 1.2d/1.4e
3: Boundary 1.4e/1.4i
4: Boundary 1.4i/1.4j
5: Boundary 1.4j/1.5j
6: Boundary 1.5j/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2d
ENST00000219479
2d
ENSE00001529864
chr16:
447209-447313
105
NDKM_HUMAN
1-31
31
2
A:0-2
B:1-2
3
2
1.4e
ENST00000219479
4e
ENSE00001757263
chr16:
448990-449123
134
NDKM_HUMAN
31-75
45
2
A:3-42
B:3-42
40
40
1.4i
ENST00000219479
4i
ENSE00001687205
chr16:
449379-449480
102
NDKM_HUMAN
76-109
34
2
A:43-76
B:43-76
34
34
1.4j
ENST00000219479
4j
ENSE00001710387
chr16:
449627-449739
113
NDKM_HUMAN
110-147
38
2
A:77-114
B:77-114
38
38
1.5j
ENST00000219479
5j
ENSE00001958819
chr16:
450219-450759
541
NDKM_HUMAN
147-187
41
2
A:114-142
B:114-142
29
29
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ehwa_ (A:)
1b: SCOP_d1ehwb_ (B:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Nucleoside diphosphate kinase, NDK
(129)
Family
:
Nucleoside diphosphate kinase, NDK
(112)
Protein domain
:
Nucleoside diphosphate kinase, NDK
(66)
Human (Homo sapiens), NDK4 [TaxId: 9606]
(1)
1a
d1ehwa_
A:
1b
d1ehwb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ehwA00 (A:0-142)
1b: CATH_1ehwB00 (B:1-142)
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Classes
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.141, no name defined]
(46)
Human (Homo sapiens)
(5)
1a
1ehwA00
A:0-142
1b
1ehwB00
B:1-142
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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