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Getting 'Exon' information from database.
1EGD
Asym. Unit
Info
Asym.Unit (256 KB)
Biol.Unit 1 (249 KB)
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(1)
Title
:
STRUCTURE OF T255E, E376G MUTANT OF HUMAN MEDIUM CHAIN ACYL-COA DEHYDROGENASE
Authors
:
H. J. Lee, M. Wang, R. Paschke, A. Nandy, S. Ghisla, J. P. Kim
Date
:
11 Apr 96 (Deposition) - 16 Jun 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Acyl-Coa Dehydrogenase, Flavoprotein, Electron Transfer
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Lee, M. Wang, R. Paschke, A. Nandy, S. Ghisla, J. J. Kim
Crystal Structures Of The Wild Type And The Glu376Gly/Thr255Glu Mutant Of Human Medium-Chain Acyl-Coa Dehydrogenase: Influence Of The Location Of The Catalytic Base On Substrate Specificity.
Biochemistry V. 35 12412 1996
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: CA1 (UNKNOWN)
6: CA2 (UNKNOWN)
7: CA3 (UNKNOWN)
8: CA4 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:133 , VAL A:135 , THR A:136 , GLY A:141 , SER A:142 , TRP A:166 , THR A:168 , ASN A:214 , ILE A:371 , THR A:378 , GLN A:380 , HOH A:2012 , HOH A:2075 , HOH A:2078 , ARG B:281 , THR B:283 , PHE B:284 , LEU B:288 , ILE B:294 , GLN B:349 , ILE B:350 , GLY B:353 , GLN D:292
BINDING SITE FOR RESIDUE FAD A 399
2
AC2
SOFTWARE
ARG A:281 , THR A:283 , PHE A:284 , LEU A:288 , ILE A:294 , GLN A:349 , ILE A:350 , GLY A:353 , TYR B:133 , VAL B:135 , THR B:136 , GLY B:141 , SER B:142 , TRP B:166 , THR B:168 , ASN B:214 , ILE B:374 , TYR B:375 , THR B:378 , GLN B:380 , HOH B:2008 , HOH B:2048 , HOH B:2056 , HOH B:2076 , GLN C:292
BINDING SITE FOR RESIDUE FAD B 399
3
AC3
SOFTWARE
GLN B:292 , TYR C:133 , VAL C:135 , THR C:136 , GLY C:141 , SER C:142 , TRP C:166 , THR C:168 , ILE C:374 , THR C:378 , GLN C:380 , HOH C:2095 , ARG D:281 , THR D:283 , PHE D:284 , ILE D:294 , GLN D:349 , ILE D:350 , GLY D:353 , HOH D:2004
BINDING SITE FOR RESIDUE FAD C 399
4
AC4
SOFTWARE
GLN A:292 , ARG C:281 , THR C:283 , PHE C:284 , LEU C:288 , HIS C:291 , ILE C:294 , GLN C:349 , ILE C:350 , GLY C:353 , HOH C:2222 , TYR D:133 , VAL D:135 , THR D:136 , GLY D:141 , SER D:142 , TRP D:166 , THR D:168 , ASN D:214 , THR D:222 , THR D:378 , GLN D:380 , HOH D:2025
BINDING SITE FOR RESIDUE FAD D 399
5
CA1
UNKNOWN
GLY A:376
CATALYTIC BASE IN CHAIN A
6
CA2
UNKNOWN
GLY B:376
CATALYTIC BASE IN CHAIN B
7
CA3
UNKNOWN
GLY C:376
CATALYTIC BASE IN CHAIN C
8
CA4
UNKNOWN
GLY D:376
CATALYTIC BASE IN CHAIN D
[
close Site info
]
SAPs(SNPs)/Variants
(20, 80)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_000317 (R28C, chain A/B/C/D, )
02: VAR_013698 (Y42H, chain A/B/C/D, )
03: VAR_015954 (I53T, chain A/B/C/D, )
04: VAR_015955 (C91Y, chain A/B/C/D, )
05: VAR_015956 (T96I, chain A/B/C/D, )
06: VAR_035716 (P107R, chain A/B/C/D, )
07: VAR_000319 (M124I, chain A/B/C/D, )
08: VAR_000320 (T168A, chain A/B/C/D, )
09: VAR_000321 (G170R, chain A/B/C/D, )
10: VAR_015957 (R181L, chain A/B/C/D, )
11: VAR_000322 (C219R, chain A/B/C/D, )
12: VAR_013699 (S220L, chain A/B/C/D, )
13: VAR_000323 (G242R, chain A/B/C/D, )
14: VAR_013700 (R256T, chain A/B/C/D, )
15: VAR_015958 (G285R, chain A/B/C/D, )
16: VAR_000324 (M301T, chain A/B/C/D, )
17: VAR_000325 (K304E, chain A/B/C/D, )
18: VAR_000326 (S311R, chain A/B/C/D, )
19: VAR_015959 (Y327C, chain A/B/C/D, )
20: VAR_000327 (I350T, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_000317
R
53
C
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
R
28
C
02
UniProt
VAR_013698
Y
67
H
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
Y
42
H
03
UniProt
VAR_015954
I
78
T
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
I
53
T
04
UniProt
VAR_015955
C
116
Y
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
C
91
Y
05
UniProt
VAR_015956
T
121
I
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
T
96
I
06
UniProt
VAR_035716
P
132
R
ACADM_HUMAN
Unclassified
---
A/B/C/D
P
107
R
07
UniProt
VAR_000319
M
149
I
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
M
124
I
08
UniProt
VAR_000320
T
193
A
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
T
168
A
09
UniProt
VAR_000321
G
195
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
G
170
R
10
UniProt
VAR_015957
R
206
L
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
R
181
L
11
UniProt
VAR_000322
C
244
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
C
219
R
12
UniProt
VAR_013699
S
245
L
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
S
220
L
13
UniProt
VAR_000323
G
267
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
G
242
R
14
UniProt
VAR_013700
R
281
T
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
R
256
T
15
UniProt
VAR_015958
G
310
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
G
285
R
16
UniProt
VAR_000324
M
326
T
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
M
301
T
17
UniProt
VAR_000325
K
329
E
ACADM_HUMAN
Disease (ACADMD)
77931234
A/B/C/D
K
304
E
18
UniProt
VAR_000326
S
336
R
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
S
311
R
19
UniProt
VAR_015959
Y
352
C
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
Y
327
C
20
UniProt
VAR_000327
I
375
T
ACADM_HUMAN
Disease (ACADMD)
---
A/B/C/D
I
350
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ACYL_COA_DH_1 (A:134-146,B:134-146,C:134-146,D:13...)
2: ACYL_COA_DH_2 (A:349-368,B:349-368,C:349-368,D:34...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACYL_COA_DH_1
PS00072
Acyl-CoA dehydrogenases signature 1.
ACADM_HUMAN
159-171
4
A:134-146
B:134-146
C:134-146
D:134-146
2
ACYL_COA_DH_2
PS00073
Acyl-CoA dehydrogenases signature 2.
ACADM_HUMAN
374-393
4
A:349-368
B:349-368
C:349-368
D:349-368
[
close PROSITE info
]
Exons
(11, 44)
Info
All Exons
Exon 1.2b (A:10-15 | B:10-15 | C:10-15 | D:10...)
Exon 1.3b (A:15-47 | B:15-47 | C:15-47 | D:15...)
Exon 1.4b (A:48-71 | B:48-71 | C:48-71 | D:48...)
Exon 1.4g (A:71-104 | B:71-104 | C:71-104 | D...)
Exon 1.5b (A:105-131 | B:105-131 | C:105-131 ...)
Exon 1.6 (A:132-175 | B:132-175 | C:132-175 ...)
Exon 1.7b (A:175-211 | B:175-211 | C:175-211 ...)
Exon 1.8d (A:212-258 | B:212-258 | C:212-258 ...)
Exon 1.9a (A:259-290 | B:259-290 | C:259-290 ...)
Exon 1.12c (A:291-373 | B:291-373 | C:291-373 ...)
Exon 1.13f (A:374-396 | B:374-396 | C:374-396 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.2b
02: Boundary 1.2b/1.3b
03: Boundary 1.3b/1.4b
04: Boundary 1.4b/1.4g
05: Boundary 1.4g/1.5b
06: Boundary 1.5b/1.6
07: Boundary 1.6/1.7b
08: Boundary 1.7b/1.8d
09: Boundary 1.8d/1.9a
10: Boundary 1.9a/1.12c
11: Boundary 1.12c/1.13f
12: Boundary 1.13f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000370841
1a
ENSE00001844831
chr1:
76190036-76190502
467
ACADM_HUMAN
1-10
10
0
-
-
1.2b
ENST00000370841
2b
ENSE00000830661
chr1:
76194086-76194173
88
ACADM_HUMAN
11-40
30
4
A:10-15
B:10-15
C:10-15
D:10-15
6
6
6
6
1.3b
ENST00000370841
3b
ENSE00000830662
chr1:
76198329-76198426
98
ACADM_HUMAN
40-72
33
4
A:15-47
B:15-47
C:15-47
D:15-47
33
33
33
33
1.4b
ENST00000370841
4b
ENSE00000830663
chr1:
76198538-76198607
70
ACADM_HUMAN
73-96
24
4
A:48-71
B:48-71
C:48-71
D:48-71
24
24
24
24
1.4g
ENST00000370841
4g
ENSE00000830664
chr1:
76199213-76199313
101
ACADM_HUMAN
96-129
34
4
A:71-104
B:71-104
C:71-104
D:71-104
34
34
34
34
1.5b
ENST00000370841
5b
ENSE00000830665
chr1:
76200476-76200556
81
ACADM_HUMAN
130-156
27
4
A:105-131
B:105-131
C:105-131
D:105-131
27
27
27
27
1.6
ENST00000370841
6
ENSE00000830666
chr1:
76205665-76205795
131
ACADM_HUMAN
157-200
44
4
A:132-175
B:132-175
C:132-175
D:132-175
44
44
44
44
1.7b
ENST00000370841
7b
ENSE00000830671
chr1:
76211491-76211599
109
ACADM_HUMAN
200-236
37
4
A:175-211
B:175-211
C:175-211
D:175-211
37
37
37
37
1.8d
ENST00000370841
8d
ENSE00000931972
chr1:
76215104-76215244
141
ACADM_HUMAN
237-283
47
4
A:212-258
B:212-258
C:212-258
D:212-258
47
47
47
47
1.9a
ENST00000370841
9a
ENSE00000931973
chr1:
76216136-76216231
96
ACADM_HUMAN
284-315
32
4
A:259-290
B:259-290
C:259-290
D:259-290
32
32
32
32
1.12c
ENST00000370841
12c
ENSE00000931974
chr1:
76226807-76227055
249
ACADM_HUMAN
316-398
83
4
A:291-373
B:291-373
C:291-373
D:291-373
83
83
83
83
1.13f
ENST00000370841
13f
ENSE00001513957
chr1:
76228377-76229364
988
ACADM_HUMAN
399-421
23
4
A:374-396
B:374-396
C:374-396
D:374-396
23
23
23
23
[
close EXON info
]
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1egda1 (A:242-396)
1b: SCOP_d1egdb1 (B:242-396)
1c: SCOP_d1egdc1 (C:242-396)
1d: SCOP_d1egdd1 (D:242-396)
2a: SCOP_d1egda2 (A:10-241)
2b: SCOP_d1egdb2 (B:10-241)
2c: SCOP_d1egdc2 (C:10-241)
2d: SCOP_d1egdd2 (D:10-241)
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(
)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
(29)
Protein domain
:
Medium chain acyl-CoA dehydrogenase, C-domain
(8)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1egda1
A:242-396
1b
d1egdb1
B:242-396
1c
d1egdc1
C:242-396
1d
d1egdd1
D:242-396
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
(32)
Protein domain
:
Medium chain acyl-CoA dehydrogenase, NM domains
(8)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d1egda2
A:10-241
2b
d1egdb2
B:10-241
2c
d1egdc2
C:10-241
2d
d1egdd2
D:10-241
[
close SCOP info
]
CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1egdA01 (A:12-130)
1b: CATH_1egdB01 (B:12-130)
1c: CATH_1egdC01 (C:12-130)
1d: CATH_1egdD01 (D:12-130)
2a: CATH_1egdA03 (A:252-392)
2b: CATH_1egdC03 (C:252-392)
2c: CATH_1egdD03 (D:252-392)
2d: CATH_1egdB03 (B:252-392)
3a: CATH_1egdA02 (A:131-251)
3b: CATH_1egdB02 (B:131-251)
3c: CATH_1egdC02 (C:131-251)
3d: CATH_1egdD02 (D:131-251)
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Butyryl-Coa Dehydrogenase, subunit A; domain 1
(28)
Homologous Superfamily
:
Butyryl-Coa Dehydrogenase, subunit A, domain 1
(28)
Human (Homo sapiens)
(10)
1a
1egdA01
A:12-130
1b
1egdB01
B:12-130
1c
1egdC01
C:12-130
1d
1egdD01
D:12-130
Architecture
:
Up-down Bundle
(3216)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 3
(76)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 3
(37)
Human (Homo sapiens)
(13)
2a
1egdA03
A:252-392
2b
1egdC03
C:252-392
2c
1egdD03
D:252-392
2d
1egdB03
B:252-392
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 2
(35)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 2
(35)
Human (Homo sapiens)
(14)
3a
1egdA02
A:131-251
3b
1egdB02
B:131-251
3c
1egdC02
C:131-251
3d
1egdD02
D:131-251
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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