PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1EG7
Biol. Unit 1
Info
Asym.Unit (180 KB)
Biol.Unit 1 (343 KB)
Biol.Unit 2 (173 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE CRYSTAL STRUCTURE OF FORMYLTETRAHYDROFOLATE SYNTHETASE FROM MOORELLA THERMOACETICA
Authors
:
R. Radfar, R. Shin, G. M. Sheldrick, W. Minor, C. R. Lovell, J. D. Odom, R. L. Lebioda
Date
:
14 Feb 00 (Deposition) - 14 Feb 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A,B (1x)
Keywords
:
Synthetase, Folate Binding, Atp Binding, Formate Binding, Monovalent Cation Binding, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Radfar, R. Shin, G. M. Sheldrick, W. Minor, C. R. Lovell, J. D. Odom, R. B. Dunlap, L. Lebioda
The Crystal Structure Of N(10)-Formyltetrahydrofolate Synthetase From Moorella Thermoacetica.
Biochemistry V. 39 3920 2000
[
close entry info
]
Hetero Components
(1, 22)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
22
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:1074 , ARG A:1097 , GLY A:1303 , PHE A:1304
BINDING SITE FOR RESIDUE SO4 A 1
02
AC2
SOFTWARE
LYS B:1074 , ARG B:1097 , GLY B:1303 , PHE B:1304
BINDING SITE FOR RESIDUE SO4 B 2
03
AC3
SOFTWARE
ARG A:1178 , ILE A:1532 , MET A:1533
BINDING SITE FOR RESIDUE SO4 A 3
04
AC4
SOFTWARE
HOH A:262 , SER A:1044 , ASP A:1046 , LYS A:1256
BINDING SITE FOR RESIDUE SO4 A 4
05
AC5
SOFTWARE
ARG A:1175 , ARG A:1178 , GLY A:1537
BINDING SITE FOR RESIDUE SO4 A 5
06
AC6
SOFTWARE
ARG A:1319 , TYR A:1441 , ASN A:1442 , LEU A:1443
BINDING SITE FOR RESIDUE SO4 A 6
07
AC7
SOFTWARE
HOH A:135 , ASN A:1382 , ALA A:1383 , TRP A:1412
BINDING SITE FOR RESIDUE SO4 A 7
08
AC8
SOFTWARE
ASP A:1007 , TYR A:1116
BINDING SITE FOR RESIDUE SO4 A 8
09
AC9
SOFTWARE
ALA A:1188 , ARG B:1175 , ARG B:1178 , MET B:1533
BINDING SITE FOR RESIDUE SO4 B 9
10
BC1
SOFTWARE
SER B:1044 , ASP B:1046 , LYS B:1256
BINDING SITE FOR RESIDUE SO4 B 10
11
BC2
SOFTWARE
HOH B:303 , ARG B:1162 , THR B:1163 , ILE B:1164
BINDING SITE FOR RESIDUE SO4 B 11
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: FTHFS_1 (A:1106-1116,B:1106-1116)
2: FTHFS_2 (A:1331-1342,B:1331-1342)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FTHFS_1
PS00721
Formate--tetrahydrofolate ligase signature 1.
FTHS_MOOTH
106-116
4
A:1106-1116
B:1106-1116
2
FTHFS_2
PS00722
Formate--tetrahydrofolate ligase signature 2.
FTHS_MOOTH
331-342
4
A:1331-1342
B:1331-1342
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1eg7a_ (A:)
1b: SCOP_d1eg7b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nitrogenase iron protein-like
(152)
Protein domain
:
Formyltetrahydrofolate synthetase
(3)
Moorella thermoacetica [TaxId: 1525]
(3)
1a
d1eg7a_
A:
1b
d1eg7b_
B:
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1eg7A02 (A:1132-1250)
1b: CATH_1eg7B02 (B:1132-1250)
2a: CATH_1eg7B01 (B:1008-1131,B:1251-1445)
2b: CATH_1eg7A01 (A:1007-1131,A:1251-1445)
3a: CATH_1eg7A03 (A:1446-1535)
3b: CATH_1eg7B03 (B:1446-1535)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Domain 2, N(10)-formyltetrahydrofolate synthetase
(4)
Homologous Superfamily
:
Domain 2, N(10)-formyltetrahydrofolate synthetase
(4)
Moorella thermoacetica. Organism_taxid: 1525.
(3)
1a
1eg7A02
A:1132-1250
1b
1eg7B02
B:1132-1250
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Moorella thermoacetica. Organism_taxid: 1525.
(3)
2a
1eg7B01
B:1008-1131,B:1251-1445
2b
1eg7A01
A:1007-1131,A:1251-1445
Architecture
:
Roll
(3276)
Topology
:
Formyltetrahydrofolate synthetase; domain 3
(3)
Homologous Superfamily
:
Formyltetrahydrofolate synthetase, domain 3
(3)
Moorella thermoacetica. Organism_taxid: 1525.
(3)
3a
1eg7A03
A:1446-1535
3b
1eg7B03
B:1446-1535
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Asymmetric Unit 2
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (180 KB)
Header - Asym.Unit
Biol.Unit 1 (343 KB)
Header - Biol.Unit 1
Biol.Unit 2 (173 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1EG7
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
