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1EFN
Asym. Unit
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Asym.Unit (62 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
HIV-1 NEF PROTEIN IN COMPLEX WITH R96I MUTANT FYN SH3 DOMAIN
Authors
:
C. -H. Lee, J. Kuriyan
Date
:
29 Jun 96 (Deposition) - 11 Jan 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Complex (Sh3 Domain/Viral Enhancer), Proto-Oncogene, Transferase, Tyrosine-Protein Kinase, Phosphorylation, Aids, Myristylation, Gtp-Binding, Atp-Binding, Sh3 Domain, Sh2 Domain, Ppii Helix, Pxxp Motif
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. H. Lee, K. Saksela, U. A. Mirza, B. T. Chait, J. Kuriyan
Crystal Structure Of The Conserved Core Of Hiv-1 Nef Complexed With A Src Family Sh3 Domain.
Cell(Cambridge, Mass. ) V. 85 931 1996
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: TRIMETHYL LEAD ION (PBMa)
1b: TRIMETHYL LEAD ION (PBMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PBM
2
Ligand/Ion
TRIMETHYL LEAD ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS B:192 , GLU C:98 , ASP D:86 , HIS D:89
BINDING SITE FOR RESIDUE PBM B 710
2
AC2
SOFTWARE
PRO B:122 , ASP D:108
BINDING SITE FOR RESIDUE PBM D 720
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(2, 4)
Info
All Exons
Exon 1.17e (A:85-115 | C:85-115)
Exon 1.19g (A:115-141 | C:115-141)
View:
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All Exon Boundaries
1: Boundary 1.16b/1.17e
2: Boundary 1.17e/1.19g
3: Boundary 1.19g/1.20d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.9b
ENST00000368667
9b
ENSE00001414024
chr6:
112115089-112114826
264
FYN_HUMAN
-
0
0
-
-
1.11
ENST00000368667
11
ENSE00001344307
chr6:
112101838-112101769
70
FYN_HUMAN
-
0
0
-
-
1.16b
ENST00000368667
16b
ENSE00002172897
chr6:
112041265-112041008
258
FYN_HUMAN
1-83
83
0
-
-
1.17e
ENST00000368667
17e
ENSE00002146962
chr6:
112035646-112035550
97
FYN_HUMAN
83-115
33
2
A:85-115
C:85-115
31
31
1.19g
ENST00000368667
19g
ENSE00002180388
chr6:
112029223-112029125
99
FYN_HUMAN
115-148
34
2
A:115-141
C:115-141
27
27
1.20d
ENST00000368667
20d
ENSE00002152369
chr6:
112025305-112025202
104
FYN_HUMAN
148-183
36
0
-
-
1.21b
ENST00000368667
21b
ENSE00002179099
chr6:
112024237-112024088
150
FYN_HUMAN
183-233
51
0
-
-
1.22b
ENST00000368667
22b
ENSE00002142092
chr6:
112021471-112021307
165
FYN_HUMAN
233-288
56
0
-
-
1.24e
ENST00000368667
24e
ENSE00001880540
chr6:
112017659-112017480
180
FYN_HUMAN
288-348
61
0
-
-
1.25a
ENST00000368667
25a
ENSE00002170268
chr6:
112015907-112015831
77
FYN_HUMAN
348-373
26
0
-
-
1.26
ENST00000368667
26
ENSE00002155280
chr6:
112015731-112015578
154
FYN_HUMAN
374-425
52
0
-
-
1.28a
ENST00000368667
28a
ENSE00002153373
chr6:
111995833-111995702
132
FYN_HUMAN
425-469
45
0
-
-
1.29e
ENST00000368667
29e
ENSE00002112481
chr6:
111983150-111982485
666
FYN_HUMAN
469-537
69
0
-
-
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1efna_ (A:)
1b: SCOP_d1efnc_ (C:)
2a: SCOP_d1efnb_ (B:)
2b: SCOP_d1efnd_ (D:)
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)
(
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
SH3-domain
(255)
Protein domain
:
Fyn proto-oncogene tyrosine kinase, SH3 domain
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1efna_
A:
1b
d1efnc_
C:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Regulatory factor Nef
(10)
Superfamily
:
Regulatory factor Nef
(10)
Family
:
Regulatory factor Nef
(8)
Protein domain
:
Regulatory factor Nef
(4)
Human immunodeficiency virus type 1 [TaxId: 11676]
(4)
2a
d1efnb_
B:
2b
d1efnd_
D:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1efnB00 (B:71-203)
1b: CATH_1efnD00 (D:71-203)
2a: CATH_1efnA00 (A:85-141)
2b: CATH_1efnC00 (C:85-141)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nef Regulatory Factor
(6)
Homologous Superfamily
:
Nef Regulatory Factor
(6)
Human (Homo sapiens)
(1)
1a
1efnB00
B:71-203
1b
1efnD00
D:71-203
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Human (Homo sapiens)
(133)
2a
1efnA00
A:85-141
2b
1efnC00
C:85-141
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (62 KB)
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