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1EEY
Biol. Unit 1
Info
Asym.Unit (133 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE DETERMINATION OF HLA A2 COMPLEXED TO PEPTIDE GP2 WITH THE SUBSTITUTION (I2L/V5L/L9V)
Authors
:
A. K. Sharma, J. J. Kuhns, E. J. Collins
Date
:
04 Feb 00 (Deposition) - 10 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Major Histicompatibility Complex, Peptide Binding, Crystallography, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. K. Sharma, J. J. Kuhns, S. Yan, R. H. Friedline, B. Long, R. Tisch, E. J. Collins
Class I Major Histocompatibility Complex Anchor Substitutions Alter The Conformation Of T Cell Receptor Contacts.
J. Biol. Chem. V. 276 21443 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(22, 22)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_004334 (F9Y, chain A, )
02: VAR_004335 (D30N, chain A, )
03: VAR_016726 (A41G, chain A, )
04: VAR_004336 (Q43R, chain A, )
05: VAR_004337 (K66N, chain A, )
06: VAR_016727 (H70Q, chain A, )
07: VAR_004338 (T73I, chain A, )
08: VAR_016728 (H74D, chain A, )
09: VAR_004339 (V95L, chain A, )
10: VAR_004340 (R97M, chain A, )
11: VAR_004341 (Y99C, chain A, )
12: VAR_004342 (Y99F, chain A, )
13: VAR_004343 (W107G, chain A, )
14: VAR_004344 (M138K, chain A, )
15: VAR_004345 (A149T, chain A, )
16: VAR_004346 (V152E, chain A, )
17: VAR_004348 (L156Q, chain A, )
18: VAR_004347 (L156W, chain A, )
19: VAR_004349 (T163E, chain A, )
20: VAR_016729 (E166D, chain A, )
21: VAR_016730 (W167G, chain A, )
22: VAR_004350 (A236E, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_004334
F
33
Y
1A02_HUMAN
Polymorphism
---
A
F
9
Y
02
UniProt
VAR_004335
D
54
N
1A02_HUMAN
Polymorphism
---
A
D
30
N
03
UniProt
VAR_016726
A
65
G
1A02_HUMAN
Polymorphism
---
A
A
41
G
04
UniProt
VAR_004336
Q
67
R
1A02_HUMAN
Polymorphism
---
A
Q
43
R
05
UniProt
VAR_004337
K
90
N
1A02_HUMAN
Polymorphism
---
A
K
66
N
06
UniProt
VAR_016727
H
94
Q
1A02_HUMAN
Polymorphism
---
A
H
70
Q
07
UniProt
VAR_004338
T
97
I
1A02_HUMAN
Polymorphism
---
A
T
73
I
08
UniProt
VAR_016728
H
98
D
1A02_HUMAN
Polymorphism
---
A
H
74
D
09
UniProt
VAR_004339
V
119
L
1A02_HUMAN
Polymorphism
---
A
V
95
L
10
UniProt
VAR_004340
R
121
M
1A02_HUMAN
Polymorphism
---
A
R
97
M
11
UniProt
VAR_004341
Y
123
C
1A02_HUMAN
Polymorphism
---
A
Y
99
C
12
UniProt
VAR_004342
Y
123
F
1A02_HUMAN
Polymorphism
---
A
Y
99
F
13
UniProt
VAR_004343
W
131
G
1A02_HUMAN
Polymorphism
---
A
W
107
G
14
UniProt
VAR_004344
M
162
K
1A02_HUMAN
Polymorphism
---
A
M
138
K
15
UniProt
VAR_004345
A
173
T
1A02_HUMAN
Polymorphism
---
A
A
149
T
16
UniProt
VAR_004346
V
176
E
1A02_HUMAN
Polymorphism
---
A
V
152
E
17
UniProt
VAR_004348
L
180
Q
1A02_HUMAN
Polymorphism
---
A
L
156
Q
18
UniProt
VAR_004347
L
180
W
1A02_HUMAN
Polymorphism
---
A
L
156
W
19
UniProt
VAR_004349
T
187
E
1A02_HUMAN
Polymorphism
---
A
T
163
E
20
UniProt
VAR_016729
E
190
D
1A02_HUMAN
Polymorphism
---
A
E
166
D
21
UniProt
VAR_016730
W
191
G
1A02_HUMAN
Polymorphism
---
A
W
167
G
22
UniProt
VAR_004350
A
260
E
1A02_HUMAN
Polymorphism
---
A
A
236
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_GORGO
98-104
1
B:78-84
-
B2MG_HUMAN
98-104
1
B:78-84
-
B2MG_PANTR
98-104
1
B:78-84
-
1A02_HUMAN
281-287
1
A:257-263
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1eeyb_ (B:)
1b: SCOP_d1eeye_ (E:)
2a: SCOP_d1eeya1 (A:182-275)
2b: SCOP_d1eeyd1 (D:182-275)
3a: SCOP_d1eeya2 (A:1-181)
3b: SCOP_d1eeyd2 (D:1-181)
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(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1eeyb_
B:
1b
d1eeye_
E:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Human (Homo sapiens) [TaxId: 9606]
(187)
2a
d1eeya1
A:182-275
2b
d1eeyd1
D:182-275
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Human (Homo sapiens), HLA-A2.1 [TaxId: 9606]
(92)
3a
d1eeya2
A:1-181
3b
d1eeyd2
D:1-181
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1eeyA01 (A:1-181)
1b: CATH_1eeyD01 (D:1-181)
2a: CATH_1eeyB00 (B:0-99)
2b: CATH_1eeyA02 (A:182-270)
2c: CATH_1eeyD02 (D:182-270)
2d: CATH_1eeyE00 (E:0-99)
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(
)
(
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1eeyA01
A:1-181
1b
1eeyD01
D:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1eeyB00
B:0-99
2b
1eeyA02
A:182-270
2c
1eeyD02
D:182-270
2d
1eeyE00
E:0-99
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (133 KB)
Header - Asym.Unit
Biol.Unit 1 (66 KB)
Header - Biol.Unit 1
Biol.Unit 2 (66 KB)
Header - Biol.Unit 2
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