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Getting 'Exon' information from database.
1EAX
Asym. Unit
Info
Asym.Unit (52 KB)
Biol.Unit 1 (47 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MTSP1 (MATRIPTASE)
Authors
:
R. Friedrich, W. Bode
Date
:
17 Jul 01 (Deposition) - 28 Jan 02 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Serine Proteinase, Matrix Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Friedrich, P. Fuentes-Prior, E. Ong, G. Coombs, M. Hunter, R. Oehler, D. Pierson, R. Gonzalez, R. Huber, W. Bode, E. L. Madison
Catalytic Domain Structures Of Mt-Sp1/Matriptase, A Matrix- Degrading Transmembrane Serine Proteinase.
J. Biol. Chem. V. 277 2160 2002
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: BENZAMIDINE (BENa)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BEN
1
Ligand/Ion
BENZAMIDINE
2
SO4
1
Ligand/Ion
SULFATE ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:57 , GLN A:192 , GLY A:193 , SER A:195 , BEN A:818 , HOH A:2062 , HOH A:2341 , HOH A:2377 , HOH A:2378 , HOH A:2379 , HOH A:2380
BINDING SITE FOR RESIDUE SO4 A 717
2
AC2
SOFTWARE
ASP A:189 , SER A:190 , CYS A:191 , GLN A:192 , SER A:195 , GLY A:216 , GLY A:219 , GLY A:226 , SO4 A:717 , HOH A:2360 , HOH A:2381
BINDING SITE FOR RESIDUE BEN A 818
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_032849 (G216R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_032849
G
827
R
ST14_HUMAN
Disease (ARCI11)
---
A
G
216
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:16-243)
2: TRYPSIN_HIS (A:53-58)
3: TRYPSIN_SER (A:189-200)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
ST14_HUMAN
615-854
1
A:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
ST14_HUMAN
652-657
1
A:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
ST14_HUMAN
799-810
1
A:189-200
[
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Exons
(4, 4)
Info
All Exons
Exon 1.16 (A:16-60F)
Exon 1.17 (A:60F-148)
Exon 1.18 (A:148-192 (gaps))
Exon 1.19b (A:193-244 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.15/1.16
2: Boundary 1.16/1.17
3: Boundary 1.17/1.18
4: Boundary 1.18/1.19b
5: Boundary 1.19b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000278742
1a
ENSE00001334626
chr11:
130029457-130029955
499
ST14_HUMAN
1-27
27
0
-
-
1.2
ENST00000278742
2
ENSE00000990418
chr11:
130058009-130058168
160
ST14_HUMAN
28-81
54
0
-
-
1.3
ENST00000278742
3
ENSE00000990419
chr11:
130058425-130058552
128
ST14_HUMAN
81-123
43
0
-
-
1.4
ENST00000278742
4
ENSE00000990421
chr11:
130058764-130058834
71
ST14_HUMAN
124-147
24
0
-
-
1.5c
ENST00000278742
5c
ENSE00000990422
chr11:
130059634-130059791
158
ST14_HUMAN
147-200
54
0
-
-
1.6b
ENST00000278742
6b
ENSE00000990423
chr11:
130060008-130060043
36
ST14_HUMAN
200-212
13
0
-
-
1.7b
ENST00000278742
7b
ENSE00001278516
chr11:
130060349-130060589
241
ST14_HUMAN
212-292
81
0
-
-
1.8
ENST00000278742
8
ENSE00000990429
chr11:
130064044-130064183
140
ST14_HUMAN
292-339
48
0
-
-
1.9
ENST00000278742
9
ENSE00000990430
chr11:
130064535-130064632
98
ST14_HUMAN
339-371
33
0
-
-
1.10b
ENST00000278742
10b
ENSE00000990431
chr11:
130066234-130066343
110
ST14_HUMAN
372-408
37
0
-
-
1.11b
ENST00000278742
11b
ENSE00000990432
chr11:
130066465-130066595
131
ST14_HUMAN
408-452
45
0
-
-
1.12
ENST00000278742
12
ENSE00000990433
chr11:
130067736-130067840
105
ST14_HUMAN
452-487
36
0
-
-
1.13
ENST00000278742
13
ENSE00000990434
chr11:
130068203-130068313
111
ST14_HUMAN
487-524
38
0
-
-
1.14
ENST00000278742
14
ENSE00000990435
chr11:
130068403-130068516
114
ST14_HUMAN
524-562
39
0
-
-
1.15
ENST00000278742
15
ENSE00000990436
chr11:
130068842-130068964
123
ST14_HUMAN
562-603
42
0
-
-
1.16
ENST00000278742
16
ENSE00000990437
chr11:
130069846-130070032
187
ST14_HUMAN
603-665
63
1
A:16-60F
51
1.17
ENST00000278742
17
ENSE00000990438
chr11:
130078305-130078579
275
ST14_HUMAN
665-757
93
1
A:60F-148
93
1.18
ENST00000278742
18
ENSE00000990439
chr11:
130079337-130079473
137
ST14_HUMAN
757-802
46
1
A:148-192 (gaps)
47
1.19b
ENST00000278742
19b
ENSE00000990440
chr11:
130079557-130080271
715
ST14_HUMAN
803-855
53
1
A:193-244 (gaps)
54
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1eaxa_ (A:)
View:
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(
)
(
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Folds
(
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(
)
Superfamilies
(
)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Matriptase MTSP1
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1eaxa_
A:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1eaxA02 (A:28-120,A:233-244)
1b: CATH_1eaxA01 (A:16-27,A:121-232)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
1eaxA02
A:28-120,A:233-244
1b
1eaxA01
A:16-27,A:121-232
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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(currently selected atoms:
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Chain A
Asymmetric Unit 1
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