PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1EAV
Asym. Unit
Info
Asym.Unit (198 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (76 KB)
Biol.Unit 3 (76 KB)
Biol.Unit 4 (75 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURES OF HUMAN GEPHYRIN AND PLANT CNX1 G DOMAINS - COMPARATIVE ANALYSIS AND FUNCTIONAL IMPLICATIONS
Authors
:
G. Schwarz, N. Schrader, R. R. Mendel, H. J. Hecht
Date
:
17 Jul 01 (Deposition) - 23 Nov 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G (3x)
Biol. Unit 4: H (3x)
Keywords
:
Molybdenum Cofactor Biosynthesis, Cnx1G
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Schwarz, N. Schrader, R. R. Mendel, H. J. Hecht, H. Schindelin
Crystal Structures Of Human Gephyrin And Plant Cnx1 G Domains: Comparative Analysis And Functional Implications
J. Mol. Biol. V. 312 405 2001
[
close entry info
]
Hetero Components
(1, 48)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1ag: SELENOMETHIONINE (MSEag)
1ah: SELENOMETHIONINE (MSEah)
1ai: SELENOMETHIONINE (MSEai)
1aj: SELENOMETHIONINE (MSEaj)
1ak: SELENOMETHIONINE (MSEak)
1al: SELENOMETHIONINE (MSEal)
1am: SELENOMETHIONINE (MSEam)
1an: SELENOMETHIONINE (MSEan)
1ao: SELENOMETHIONINE (MSEao)
1ap: SELENOMETHIONINE (MSEap)
1aq: SELENOMETHIONINE (MSEaq)
1ar: SELENOMETHIONINE (MSEar)
1as: SELENOMETHIONINE (MSEas)
1at: SELENOMETHIONINE (MSEat)
1au: SELENOMETHIONINE (MSEau)
1av: SELENOMETHIONINE (MSEav)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
48
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: MOCF_BIOSYNTHESIS_1 (A:74-87,B:74-87,C:74-87,D:74-87,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MOCF_BIOSYNTHESIS_1
PS01078
Molybdenum cofactor biosynthesis proteins signature 1.
CNX1_ARATH
535-548
8
A:74-87
B:74-87
C:74-87
D:74-87
E:74-87
F:74-87
G:74-87
H:74-87
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1eava_ (A:)
1b: SCOP_d1eavb_ (B:)
1c: SCOP_d1eavc_ (C:)
1d: SCOP_d1eavd_ (D:)
1e: SCOP_d1eave_ (E:)
1f: SCOP_d1eavf_ (F:)
1g: SCOP_d1eavg_ (G:)
1h: SCOP_d1eavh_ (H:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Molybdenum cofactor biosynthesis proteins
(49)
Superfamily
:
Molybdenum cofactor biosynthesis proteins
(49)
Family
:
MogA-like
(20)
Protein domain
:
Plant CNX1 G domain
(6)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(6)
1a
d1eava_
A:
1b
d1eavb_
B:
1c
d1eavc_
C:
1d
d1eavd_
D:
1e
d1eave_
E:
1f
d1eavf_
F:
1g
d1eavg_
G:
1h
d1eavh_
H:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1eavA00 (A:3-162)
1b: CATH_1eavB00 (B:3-162)
1c: CATH_1eavC00 (C:3-162)
1d: CATH_1eavD00 (D:3-162)
1e: CATH_1eavE00 (E:3-162)
1f: CATH_1eavF00 (F:3-162)
1g: CATH_1eavG00 (G:3-162)
1h: CATH_1eavH00 (H:3-162)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Molybdenum Cofactor Biosythetic Enzyme; Chain A
(34)
Homologous Superfamily
:
Molybdenum Cofactor Biosythetic Enzyme; Chain A
(34)
Mouse-ear cress (Arabidopsis thaliana)
(6)
1a
1eavA00
A:3-162
1b
1eavB00
B:3-162
1c
1eavC00
C:3-162
1d
1eavD00
D:3-162
1e
1eavE00
E:3-162
1f
1eavF00
F:3-162
1g
1eavG00
G:3-162
1h
1eavH00
H:3-162
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (198 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (76 KB)
Header - Biol.Unit 2
Biol.Unit 3 (76 KB)
Header - Biol.Unit 3
Biol.Unit 4 (75 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1EAV
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help