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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
1EA6
Asym. Unit
Info
Asym.Unit (104 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (51 KB)
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(1)
Title
:
N-TERMINAL 40KDA FRAGMENT OF NHPMS2 COMPLEXED WITH ADP
Authors
:
A. Guarne, M. S. Junop, W. Yang
Date
:
10 Jul 01 (Deposition) - 23 Nov 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Dna Repair, Ghl Atpase, Hnpcc, Mismatch Repair
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Guarne, M. S. Junop, W. Yang
Structure And Function Of The N-Terminal 40 Kda Fragment Of Human Pms2: A Monomeric Ghl Atpase
Embo J. V. 20 5521 2001
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:41 , ASN A:45 , ADP A:1366
BINDING SITE FOR RESIDUE MG A1365
2
AC2
SOFTWARE
GLU B:41 , ASN B:45 , ADP B:1366
BINDING SITE FOR RESIDUE MG B1365
3
AC3
SOFTWARE
ASN A:45 , ALA A:49 , ASP A:70 , LEU A:83 , GLU A:109 , ALA A:110 , LEU A:111 , MG A:1365 , HOH A:2023 , HOH A:2024 , HOH A:2025
BINDING SITE FOR RESIDUE ADP A1366
4
AC4
SOFTWARE
ASN B:45 , ALA B:49 , ASP B:70 , VAL B:75 , LEU B:83 , GLU B:109 , ALA B:110 , LEU B:111 , THR B:155 , MG B:1365 , HOH B:2025
BINDING SITE FOR RESIDUE ADP B1366
[
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_066838 (S46I, chain A/B, )
2: VAR_016133 (T277K, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_066838
S
46
I
PMS2_HUMAN
Disease (MMRCS)
---
A/B
S
46
I
2
UniProt
VAR_016133
T
277
K
PMS2_HUMAN
Polymorphism
1805322
A/B
T
277
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DNA_MISMATCH_REPAIR_1 (A:109-111,B:109-111)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNA_MISMATCH_REPAIR_1
PS00058
DNA mismatch repair proteins mutL / hexB / PMS1 signature.
PMS2_HUMAN
105-111
2
A:109-111
B:109-111
[
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]
Exons
(9, 18)
Info
All Exons
Exon 1.2c (A:27-55 | B:27-55)
Exon 1.3a (A:55-84 | B:55-84)
Exon 1.3c (A:84-118 (gaps) | B:84-118 (gaps))
Exon 1.4a (A:118-179 | B:118-179)
Exon 1.5a (A:180-235 | B:180-235)
Exon 1.6 (A:236-268 | B:236-268)
Exon 1.7 (A:268-301 | B:268-301)
Exon 1.8 (A:302-330 | B:302-330)
Exon 1.9 (A:330-364 (gaps) | B:330-364 (gaps...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.2c
02: Boundary 1.2c/1.3a
03: Boundary 1.3a/1.3c
04: Boundary 1.3c/1.4a
05: Boundary 1.4a/1.5a
06: Boundary 1.5a/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000265849
1a
ENSE00001848021
chr7:
6048756-6048628
129
PMS2_HUMAN
1-8
8
0
-
-
1.2c
ENST00000265849
2c
ENSE00002164014
chr7:
6045662-6045523
140
PMS2_HUMAN
8-55
48
2
A:27-55
B:27-55
29
29
1.3a
ENST00000265849
3a
ENSE00001670547
chr7:
6043689-6043603
87
PMS2_HUMAN
55-84
30
2
A:55-84
B:55-84
30
30
1.3c
ENST00000265849
3c
ENSE00001635908
chr7:
6043423-6043321
103
PMS2_HUMAN
84-118
35
2
A:84-118 (gaps)
B:84-118 (gaps)
35
35
1.4a
ENST00000265849
4a
ENSE00001617504
chr7:
6042267-6042084
184
PMS2_HUMAN
118-179
62
2
A:118-179
B:118-179
62
62
1.5a
ENST00000265849
5a
ENSE00000669412
chr7:
6038906-6038739
168
PMS2_HUMAN
180-235
56
2
A:180-235
B:180-235
56
56
1.6
ENST00000265849
6
ENSE00000923857
chr7:
6037054-6036957
98
PMS2_HUMAN
236-268
33
2
A:236-268
B:236-268
33
33
1.7
ENST00000265849
7
ENSE00000923858
chr7:
6035264-6035165
100
PMS2_HUMAN
268-301
34
2
A:268-301
B:268-301
34
34
1.8
ENST00000265849
8
ENSE00001661419
chr7:
6031688-6031604
85
PMS2_HUMAN
302-330
29
2
A:302-330
B:302-330
29
29
1.9
ENST00000265849
9
ENSE00000669420
chr7:
6029586-6029431
156
PMS2_HUMAN
330-382
53
2
A:330-364 (gaps)
B:330-364 (gaps)
35
35
1.10b
ENST00000265849
10b
ENSE00000669421
chr7:
6027251-6026390
862
PMS2_HUMAN
382-669
288
0
-
-
1.11a
ENST00000265849
11a
ENSE00001752874
chr7:
6022622-6022455
168
PMS2_HUMAN
669-725
57
0
-
-
1.12
ENST00000265849
12
ENSE00001793579
chr7:
6018327-6018227
101
PMS2_HUMAN
725-759
35
0
-
-
1.13a
ENST00000265849
13a
ENSE00001608691
chr7:
6017388-6017219
170
PMS2_HUMAN
759-815
57
0
-
-
1.14c
ENST00000265849
14c
ENSE00001848489
chr7:
6013173-6012870
304
PMS2_HUMAN
816-862
47
0
-
-
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1ea6a2 (A:27-231)
1b: SCOP_d1ea6b2 (B:27-231)
2a: SCOP_d1ea6a1 (A:232-364)
2b: SCOP_d1ea6b1 (B:232-364)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Superfamily
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Family
:
DNA gyrase/MutL, N-terminal domain
(28)
Protein domain
:
DNA mismatch repair protein PMS2
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1ea6a2
A:27-231
1b
d1ea6b2
B:27-231
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
DNA gyrase/MutL, second domain
(21)
Protein domain
:
DNA mismatch repair protein PMS2
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1ea6a1
A:232-364
2b
d1ea6b1
B:232-364
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ea6A01 (A:27-231)
1b: CATH_1ea6B01 (B:27-231)
2a: CATH_1ea6B02 (B:232-363)
2b: CATH_1ea6A02 (A:232-363)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Heat Shock Protein 90
(209)
Homologous Superfamily
:
[code=3.30.565.10, no name defined]
(205)
Human (Homo sapiens)
(95)
1a
1ea6A01
A:27-231
1b
1ea6B01
B:27-231
Topology
:
Ribosomal Protein S5; domain 2
(189)
Homologous Superfamily
:
[code=3.30.230.10, no name defined]
(170)
Human (Homo sapiens)
(6)
2a
1ea6B02
B:232-363
2b
1ea6A02
A:232-363
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Pfam Domains
(0, 0)
Info
all PFAM domains
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