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1E9L
Asym. Unit
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Asym.Unit (86 KB)
Biol.Unit 1 (82 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF NOVEL MAMMALIAN LECTIN YM1 SUGGESTS A SACCHARIDE BINDING SITE
Authors
:
C. D. Hsiao, Y. J. Sun
Date
:
21 Oct 00 (Deposition) - 01 Mar 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Macrophage Secretory Protein, Inflammation, Lectin, Inducible, Secretory
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. J. Sun, N. C. Chang, S. I. Hung, A. C. Chang, C. C. Chou, C. D. Hsiao
The Crystal Structure Of A Novel Mammalian Lectin, Ym1, Suggests A Saccharide Binding Site
J. Biol. Chem. V. 276 17507 2001
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Hetero Components
(1, 1)
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All Hetero Components
1a: D-GLUCOSAMINE (GCSa)
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No.
Name
Count
Type
Full Name
1
GCS
1
Ligand/Ion
D-GLUCOSAMINE
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:58 , GLY A:98 , TRP A:99 , ASP A:138 , GLN A:140 , MET A:210 , TYR A:212 , TRP A:360 , HOH A:2125 , HOH A:2211 , HOH A:2212 , HOH A:2214
BINDING SITE FOR RESIDUE GCS A 800
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1e9la2 (A:267-336)
2a: SCOP_d1e9la1 (A:22-266,A:337-393)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
Chitinase insertion domain
(107)
Family
:
Chitinase insertion domain
(107)
Protein domain
:
Chitinase-like lectin ym1
(2)
Mouse (Mus musculus) [TaxId: 10090]
(2)
1a
d1e9la2
A:267-336
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Type II chitinase
(131)
Protein domain
:
Chitinase-like lectin ym1, saccharide binding domain
(2)
Mouse (Mus musculus) [TaxId: 10090]
(2)
2a
d1e9la1
A:22-266,A:337-393
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CATH Domains
(2, 2)
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all CATH domains
1a: CATH_1e9lA01 (A:22-265,A:337-393)
2a: CATH_1e9lA02 (A:266-336)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
House mouse (Mus musculus)
(2)
1a
1e9lA01
A:22-265,A:337-393
Architecture
:
Roll
(3276)
Topology
:
Chitinase A; domain 3
(225)
Homologous Superfamily
:
[code=3.10.50.10, no name defined]
(121)
House mouse (Mus musculus)
(2)
2a
1e9lA02
A:266-336
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Pfam Domains
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Chain A
Asymmetric Unit 1
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