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1E9B
Asym. Unit
Info
Asym.Unit (49 KB)
Biol.Unit 1 (85 KB)
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(1)
Title
:
HUMAN THYMIDYLATE KINASE COMPLEXED WITH AZTMP AND APPNP
Authors
:
N. Ostermann, A. Lavie, S. Padiyar, R. Brundiers, T. Veit, J. Reinstein, R. S. Goody, M. Konrad, I. Schlichting
Date
:
10 Oct 00 (Deposition) - 05 Oct 01 (Release) - 19 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Phosphotransferase, Thymidylate Kinase, P-Loop, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Ostermann, A. Lavie, S. Padiyar, R. Brundiers, T. Veit, J. Reintein, R. S. Goody, M. Konrad, I. Schlichting
Potentiating Azt Activation: Structures Of Wildtype And Mutant Human Thymidylate Kinase Suggest Reasons For The Mutants' Improved Kinetics With The Hiv Prodrug Metabolite Aztmp
J. Mol. Biol. V. 304 43 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
3a: 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONO... (ATMa)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
ANP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3
ATM
1
Ligand/Ion
3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE
4
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:20 , ADP A:302 , ANP A:303 , HOH A:2030 , HOH A:2148 , HOH A:2283 , HOH A:2289
BINDING SITE FOR RESIDUE MG A 401
2
AC2
SOFTWARE
HOH A:2078 , HOH A:2162 , HOH A:2163
BINDING SITE FOR RESIDUE MG A 402
3
AC3
SOFTWARE
PHE A:42 , ARG A:45 , LEU A:57 , PHE A:72 , ARG A:76 , ARG A:97 , GLY A:102 , PHE A:105 , TYR A:151 , GLN A:157 , ANP A:303 , HOH A:2023 , HOH A:2030 , HOH A:2274 , HOH A:2275 , HOH A:2276 , HOH A:2277 , HOH A:2278 , HOH A:2279 , HOH A:2280 , HOH A:2281 , HOH A:2282 , HOH A:2289
BINDING SITE FOR RESIDUE ATM A 301
4
AC4
SOFTWARE
ARG A:16 , ALA A:17 , GLY A:18 , LYS A:19 , SER A:20 , THR A:21 , ARG A:143 , LYS A:182 , SER A:183 , ILE A:184 , ARG A:192 , ANP A:303 , MG A:401 , HOH A:2250 , HOH A:2283 , HOH A:2284 , HOH A:2285 , HOH A:2286 , HOH A:2287 , HOH A:2288 , HOH A:2289 , HOH A:2290 , HOH A:2291 , HOH A:2292 , HOH A:2293 , HOH A:2295
BINDING SITE FOR RESIDUE ADP A 302
5
AC5
SOFTWARE
ASP A:15 , ARG A:16 , ALA A:17 , GLY A:18 , LYS A:19 , SER A:20 , THR A:21 , ARG A:97 , ARG A:143 , LYS A:182 , SER A:183 , ILE A:184 , ARG A:192 , ATM A:301 , ADP A:302 , MG A:401 , HOH A:2023 , HOH A:2148 , HOH A:2250 , HOH A:2278 , HOH A:2283 , HOH A:2284 , HOH A:2285 , HOH A:2286 , HOH A:2287 , HOH A:2289 , HOH A:2290 , HOH A:2291 , HOH A:2292 , HOH A:2293 , HOH A:2295 , HOH A:2296
BINDING SITE FOR RESIDUE ANP A 303
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: THYMIDYLATE_KINASE (A:94-106)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THYMIDYLATE_KINASE
PS01331
Thymidylate kinase signature.
KTHY_HUMAN
94-106
1
A:94-106
[
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Exons
(5, 5)
Info
All Exons
Exon 1.1a (A:4-44)
Exon 1.2b (A:44-80)
Exon 1.7 (A:80-110)
Exon 1.8 (A:111-176)
Exon 1.9f (A:177-212)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9f
6: Boundary 1.9f/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000305784
1a
ENSE00001856557
chr2:
242626406-242626069
338
KTHY_HUMAN
1-44
44
1
A:4-44
41
1.2b
ENST00000305784
2b
ENSE00001630292
chr2:
242625292-242625184
109
KTHY_HUMAN
44-80
37
1
A:44-80
37
1.7
ENST00000305784
7
ENSE00001748052
chr2:
242619734-242619644
91
KTHY_HUMAN
80-110
31
1
A:80-110
31
1.8
ENST00000305784
8
ENSE00001663158
chr2:
242618064-242617867
198
KTHY_HUMAN
111-176
66
1
A:111-176
66
1.9f
ENST00000305784
9f
ENSE00001645872
chr2:
242615652-242615157
496
KTHY_HUMAN
177-212
36
1
A:177-212
36
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1e9ba_ (A:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nucleotide and nucleoside kinases
(231)
Protein domain
:
Thymidylate kinase
(34)
Human (Homo sapiens) [TaxId: 9606]
(20)
1a
d1e9ba_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1e9bA00 (A:4-212)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1e9bA00
A:4-212
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (49 KB)
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