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1E8V
Asym. Unit
Info
Asym.Unit (153 KB)
Biol.Unit 1 (147 KB)
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(1)
Title
:
STRUCTURE OF THE MULTIFUNCTIONAL PARAMYXOVIRUS HEMAGGLUTININ-NEURAMINIDASE
Authors
:
S. Crennell, T. Takimoto, A. Portner, G. Taylor
Date
:
01 Oct 00 (Deposition) - 03 Apr 01 (Release) - 09 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Sialidase, Neuraminidase, Hemagglutinin, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Crennell, T. Takimoto, A. Portner, G. Taylor
Crystal Structure Of The Multifunctional Paramyxovirus Hemagglutinin-Neuraminidase
Nat. Struct. Biol. V. 7 1068 2000
(for further references see the
PDB file header
)
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURA... (DANa)
2b: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURA... (DANb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
DAN
2
Ligand/Ion
2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID
3
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:261 , SER A:264 , VAL A:266 , VAL A:296
BINDING SITE FOR RESIDUE CA A1001
2
AC2
SOFTWARE
GLU B:256 , ASP B:261 , SER B:264 , VAL B:266 , VAL B:296
BINDING SITE FOR RESIDUE CA B1002
3
AC3
SOFTWARE
ARG A:174 , GLU A:258 , TYR A:299 , TYR A:317 , ARG A:363 , GLU A:401 , ARG A:416 , ARG A:498 , TYR A:526 , HOH A:2128 , HOH A:2129
BINDING SITE FOR RESIDUE DAN A1571
4
AC4
SOFTWARE
ARG B:174 , GLU B:258 , TYR B:299 , TYR B:317 , GLU B:401 , ARG B:416 , ARG B:498 , TYR B:526 , HOH B:2108 , HOH B:2109 , HOH B:2110
BINDING SITE FOR RESIDUE DAN B1570
5
AC5
SOFTWARE
TYR A:340 , ASN A:341
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 341 RESIDUES 1572 TO 1572
6
AC6
SOFTWARE
ASN A:481 , THR A:483
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 481 RESIDUES 1573 TO 1573
7
AC7
SOFTWARE
TYR B:340 , ASN B:341
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 341 RESIDUES 841 TO 841
8
AC8
SOFTWARE
TYR B:479 , ASN B:481 , THR B:483
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 481 RESIDUES 1571 TO 1572
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1e8va_ (A:)
1b: SCOP_d1e8vb_ (B:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Paramyxovirus hemagglutinin-neuraminidase head domain
(5)
Newcastle disease virus [TaxId: 11176]
(5)
1a
d1e8va_
A:
1b
d1e8vb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1e8vB00 (B:124-569)
1b: CATH_1e8vA00 (A:124-570)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Newcastle disease virus. Organism_taxid: 11176. Strain: kansas
(5)
1a
1e8vB00
B:124-569
1b
1e8vA00
A:124-570
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (153 KB)
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