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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
1E8S
Asym. Unit
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Asym.Unit (10 KB)
Biol.Unit 1 (6 KB)
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(1)
Title
:
ALU DOMAIN OF THE MAMMALIAN SRP (POTENTIAL ALU RETROPOSITION INTERMEDIATE)
Authors
:
O. Weichenrieder, K. Wild, K. Strub, S. Cusack
Date
:
29 Sep 00 (Deposition) - 08 Nov 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Alu Ribonucleoprotein Particle, Alu Rnp Assembly And Dimerisation, Translational Control, Alu Retroposition
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Weichenrieder, K. Wild, K. Strub, S. Cusack
Structure And Assembly Of The Alu Domain Of The Mammalian Signal Recognition Particle
Nature V. 408 167 2000
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: EUROPIUM (III) ION (EU3a)
1b: EUROPIUM (III) ION (EU3b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EU3
2
Ligand/Ion
EUROPIUM (III) ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
A C:156
BINDING SITE FOR RESIDUE EU3 C1001
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_028058 (S68I, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_028058
S
68
I
SRP14_HUMAN
Polymorphism
1802600
B
S
68
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(8, 8)
Info
All Exons
Exon 1.1 (B:2-8)
Exon 1.2 (B:9-33)
Exon 1.3 (B:33-70 (gaps))
Exon 1.4 (B:71-81)
Exon 1.5 (B:82-95)
Exon 2.1a (A:5-24)
Exon 2.2 (A:25-47)
Exon 2.5b (A:48-75)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/-
07: Boundary -/2.1a
08: Boundary 2.1a/2.2
09: Boundary 2.2/2.5b
10: Boundary 2.5b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000267884
1
ENSE00001099640
chr15:
40331389-40331294
96
SRP14_HUMAN
1-8
8
1
B:2-8
7
1.2
ENST00000267884
2
ENSE00000942420
chr15:
40331149-40331077
73
SRP14_HUMAN
9-33
25
1
B:9-33
25
1.3
ENST00000267884
3
ENSE00000942421
chr15:
40330595-40330483
113
SRP14_HUMAN
33-70
38
1
B:33-70 (gaps)
38
1.4
ENST00000267884
4
ENSE00000942422
chr15:
40329219-40329187
33
SRP14_HUMAN
71-81
11
1
B:71-81
11
1.5
ENST00000267884
5
ENSE00001099638
chr15:
40328701-40327891
811
SRP14_HUMAN
82-136
55
1
B:82-95
14
2.1a
ENST00000304786
1a
ENSE00001442734
chr1:
225965531-225965714
184
SRP09_HUMAN
1-24
24
1
A:5-24
20
2.2
ENST00000304786
2
ENSE00000961765
chr1:
225971002-225971070
69
SRP09_HUMAN
25-47
23
1
A:25-47
23
2.5b
ENST00000304786
5b
ENSE00001838300
chr1:
225976942-225978168
1227
SRP09_HUMAN
48-86
39
1
A:48-75
28
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1e8sb_ (B:)
2a: SCOP_d1e8sa_ (A:)
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Classes
(
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Folds
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)
Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Signal recognition particle alu RNA binding heterodimer, SRP9/14
(7)
Superfamily
:
Signal recognition particle alu RNA binding heterodimer, SRP9/14
(7)
Family
:
Signal recognition particle alu RNA binding heterodimer, SRP9/14
(6)
Protein domain
:
Signal recognition particle 14KDa protein, SRP14
(3)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1e8sb_
B:
Protein domain
:
Signal recognition particle 9KDa protein, SRP9
(3)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1e8sa_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Nucleic
Backbone
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Chain B
Chain C
Asymmetric Unit 1
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