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1E8N
Asym. Unit
Info
Asym.Unit (140 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, MUTANT, COMPLEXED WITH PEPTIDE
Authors
:
V. Fulop
Date
:
27 Sep 00 (Deposition) - 16 Jan 01 (Release) - 28 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,I
Biol. Unit 1: A,I (1x)
Keywords
:
Hydrolase, Prolyl Oligopeptidase, Amnesia, Alpha/Beta-Hydrolase, Beta-Propeller, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Fulop, Z. Szeltner, V. Renner, L. Polgar
Structures Of Prolyl Oligopeptidase Substrate/ Inhibitor Complexes. Use Of Inhibitor Binding For Titration Of The Catalytic Histidine Residue
J. Biol. Chem. V. 276 1262 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: 2-AMINOBENZOIC ACID (BE2a)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BE2
1
Mod. Amino Acid
2-AMINOBENZOIC ACID
2
GOL
5
Ligand/Ion
GLYCEROL
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:118 , LEU A:119 , SER A:120 , ASP A:121 , ASP A:446 , ASN A:522 , ASN A:525 , HOH A:2906 , HOH A:2907 , HOH A:2908
BINDING SITE FOR RESIDUE GOL A 790
2
AC2
SOFTWARE
ALA A:226 , GLU A:227 , PHE A:228 , ILE A:276 , LYS A:281 , HOH A:2909 , HOH A:2910
BINDING SITE FOR RESIDUE GOL A 791
3
AC3
SOFTWARE
TRP A:150 , VAL A:151 , THR A:152 , GLU A:169 , ARG A:170 , VAL A:171 , SER A:197 , HOH A:2911
BINDING SITE FOR RESIDUE GOL A 792
4
AC4
SOFTWARE
PRO A:568 , ASP A:569 , PHE A:571 , GLY A:572 , ILE A:628 , GLN A:629 , PRO A:631 , ASN A:668 , HOH A:2912 , HOH A:2913
BINDING SITE FOR RESIDUE GOL A 793
5
AC5
SOFTWARE
GLU A:239 , ASP A:291 , TYR A:292 , HOH A:2457 , HOH A:2462 , HOH A:2914 , HOH A:2915 , HOH A:2916 , HOH A:2917
BINDING SITE FOR RESIDUE GOL A 794
6
AC6
SOFTWARE
PHE A:173 , SER A:174 , GLY A:254 , TYR A:473 , PHE A:476 , ALA A:554 , ASN A:555 , ILE A:591 , ALA A:594 , TRP A:595 , ARG A:643 , HIS A:680 , HOH I:2002 , HOH I:2003
BINDING SITE FOR CHAIN I OF PEPTIDE INHIBITOR
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PPCE_PIG_001 (A29H, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PPCE_PIG_001
*
A
29
H
PPCE_PIG
---
---
A
A
29
H
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PRO_ENDOPEP_SER (A:529-559)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRO_ENDOPEP_SER
PS00708
Prolyl endopeptidase family serine active site.
PPCE_PIG
529-559
1
A:529-559
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1e8na1 (A:1-430)
2a: SCOP_d1e8na2 (A:431-710)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
Peptidase/esterase 'gauge' domain
(47)
Family
:
Prolyl oligopeptidase, N-terminal domain
(29)
Protein domain
:
Prolyl oligopeptidase, N-terminal domain
(27)
Pig (Sus scrofa) [TaxId: 9823]
(27)
1a
d1e8na1
A:1-430
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Prolyl oligopeptidase, C-terminal domain
(28)
Protein domain
:
Prolyl oligopeptidase, C-terminal domain
(27)
Pig (Sus scrofa) [TaxId: 9823]
(27)
2a
d1e8na2
A:431-710
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1e8nA01 (A:1-73,A:427-710)
2a: CATH_1e8nA02 (A:74-426)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Wild boar (Sus scrofa)
(2)
1a
1e8nA01
A:1-73,A:427-710
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
Prolyl oligopeptidase, N-terminal domain
(21)
Wild boar (Sus scrofa)
(2)
2a
1e8nA02
A:74-426
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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