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1E8C
Biol. Unit 1
Info
Asym.Unit (174 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (85 KB)
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(1)
Title
:
STRUCTURE OF MURE THE UDP-N-ACETYLMURAMYL TRIPEPTIDE SYNTHETASE FROM E. COLI
Authors
:
E. J. Gordon, L. Chantala, O. Dideberg
Date
:
19 Sep 00 (Deposition) - 13 Sep 01 (Release) - 21 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ligase, Peptidoglycan Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. J. Gordon, B. Flouret, L. Chantalat, J. Van Heijenoort, D. Mengin-Lecreulx, O. Dideberg
Crystal Structure Of Udp-N-Acetylmuramoyl-L-Alanyl-D-Glutamate: Meso-Diaminopimelate Ligase From Escherichia Coli
J. Biol. Chem. V. 276 10999 2001
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: 2,6-DIAMINOPIMELIC ACID (APIa)
1b: 2,6-DIAMINOPIMELIC ACID (APIb)
2a: CHLORIDE ION (CLa)
3a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
3b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
5a: URIDINE-5'-DIPHOSPHATE-N-ACETYLMUR... (UAGa)
5b: URIDINE-5'-DIPHOSPHATE-N-ACETYLMUR... (UAGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
API
1
Ligand/Ion
2,6-DIAMINOPIMELIC ACID
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
KCX
1
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
4
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
5
UAG
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:26 , ASP A:27 , SER A:28 , ARG A:29 , GLY A:42 , HIS A:43 , GLN A:44 , ALA A:45 , GLY A:47 , TYR A:50 , ASN A:156 , THR A:157 , THR A:158 , SER A:160 , SER A:184 , HIS A:186 , GLN A:190 , ARG A:192 , API A:1499 , HOH A:2085 , HOH A:2205 , HOH A:2206
BINDING SITE FOR RESIDUE UAG A1498
2
AC2
SOFTWARE
HIS A:210 , TYR A:357 , HIS A:359 , GLY A:386 , ARG A:389 , ASP A:413 , ASN A:414 , ARG A:416 , GLY A:464 , GLU A:468 , UAG A:1498
BINDING SITE FOR RESIDUE API A1499
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_MURE_ECOLI_001 (E343K, chain A, )
2: VAR_MURE_ECOLI_002 (A494S, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_MURE_ECOLI_001
*
E
344
K
MURE_ECOLI
---
---
A
E
343
K
2
UniProt
VAR_MURE_ECOLI_002
*
A
495
S
MURE_ECOLI
---
---
A
A
494
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1e8ca2 (A:338-497)
1b: SCOP_d1e8cb2 (B:338-498)
2a: SCOP_d1e8ca1 (A:3-103)
2b: SCOP_d1e8cb1 (B:2-103)
3a: SCOP_d1e8ca3 (A:104-337)
3b: SCOP_d1e8cb3 (B:104-337)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
MurD-like peptide ligases, peptide-binding domain
(32)
Superfamily
:
MurD-like peptide ligases, peptide-binding domain
(32)
Family
:
MurCDEF C-terminal domain
(13)
Protein domain
:
UDP-N-acetylmuramyl tripeptide synthetase MurE
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d1e8ca2
A:338-497
1b
d1e8cb2
B:338-498
Fold
:
MurF and HprK N-domain-like
(5)
Superfamily
:
MurE/MurF N-terminal domain
(2)
Family
:
MurE/MurF N-terminal domain
(2)
Protein domain
:
UDP-N-acetylmuramyl tripeptide synthetase MurE
(1)
Escherichia coli [TaxId: 562]
(1)
2a
d1e8ca1
A:3-103
2b
d1e8cb1
B:2-103
Fold
:
Ribokinase-like
(226)
Superfamily
:
MurD-like peptide ligases, catalytic domain
(32)
Family
:
MurCDEF
(23)
Protein domain
:
UDP-N-acetylmuramyl tripeptide synthetase MurE
(1)
Escherichia coli [TaxId: 562]
(1)
3a
d1e8ca3
A:104-337
3b
d1e8cb3
B:104-337
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1e8cA02 (A:104-341)
1b: CATH_1e8cB02 (B:104-341)
2a: CATH_1e8cA01 (A:3-103)
2b: CATH_1e8cB01 (B:3-103)
3a: CATH_1e8cB03 (B:343-484)
3b: CATH_1e8cA03 (A:343-497)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
(109)
Homologous Superfamily
:
[code=3.40.1190.10, no name defined]
(36)
Escherichia coli. Organism_taxid: 562.
(2)
1a
1e8cA02
A:104-341
1b
1e8cB02
B:104-341
Topology
:
Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1
(9)
Homologous Superfamily
:
[code=3.40.1390.10, no name defined]
(2)
Escherichia coli. Organism_taxid: 562.
(1)
2a
1e8cA01
A:3-103
2b
1e8cB01
B:3-103
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
[code=3.90.190.20, no name defined]
(34)
Escherichia coli. Organism_taxid: 562.
(2)
3a
1e8cB03
B:343-484
3b
1e8cA03
A:343-497
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Pfam Domains
(0, 0)
Info
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Chain A
Asymmetric Unit 1
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Asym.Unit (174 KB)
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