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1E8C
Asym. Unit
Info
Asym.Unit (174 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (85 KB)
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(1)
Title
:
STRUCTURE OF MURE THE UDP-N-ACETYLMURAMYL TRIPEPTIDE SYNTHETASE FROM E. COLI
Authors
:
E. J. Gordon, L. Chantala, O. Dideberg
Date
:
19 Sep 00 (Deposition) - 13 Sep 01 (Release) - 21 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ligase, Peptidoglycan Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. J. Gordon, B. Flouret, L. Chantalat, J. Van Heijenoort, D. Mengin-Lecreulx, O. Dideberg
Crystal Structure Of Udp-N-Acetylmuramoyl-L-Alanyl-D-Glutamate: Meso-Diaminopimelate Ligase From Escherichia Coli
J. Biol. Chem. V. 276 10999 2001
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Hetero Components
(5, 31)
Info
All Hetero Components
1a: 2,6-DIAMINOPIMELIC ACID (APIa)
1b: 2,6-DIAMINOPIMELIC ACID (APIb)
2a: CHLORIDE ION (CLa)
3a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
3b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
5a: URIDINE-5'-DIPHOSPHATE-N-ACETYLMUR... (UAGa)
5b: URIDINE-5'-DIPHOSPHATE-N-ACETYLMUR... (UAGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
API
2
Ligand/Ion
2,6-DIAMINOPIMELIC ACID
2
CL
1
Ligand/Ion
CHLORIDE ION
3
KCX
2
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
4
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
5
UAG
2
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:26 , ASP A:27 , SER A:28 , ARG A:29 , GLY A:42 , HIS A:43 , GLN A:44 , ALA A:45 , GLY A:47 , TYR A:50 , ASN A:156 , THR A:157 , THR A:158 , SER A:160 , SER A:184 , HIS A:186 , GLN A:190 , ARG A:192 , API A:1499 , HOH A:2085 , HOH A:2205 , HOH A:2206
BINDING SITE FOR RESIDUE UAG A1498
2
AC2
SOFTWARE
HIS A:210 , TYR A:357 , HIS A:359 , GLY A:386 , ARG A:389 , ASP A:413 , ASN A:414 , ARG A:416 , GLY A:464 , GLU A:468 , UAG A:1498
BINDING SITE FOR RESIDUE API A1499
3
AC3
SOFTWARE
LEU B:26 , ASP B:27 , SER B:28 , ARG B:29 , PHE B:37 , GLY B:42 , HIS B:43 , GLN B:44 , ALA B:45 , GLY B:47 , TYR B:50 , ASN B:156 , THR B:157 , THR B:158 , SER B:160 , SER B:184 , HIS B:186 , GLN B:190 , ARG B:192 , HIS B:210 , API B:1499 , HOH B:2107 , HOH B:2184 , HOH B:2185 , HOH B:2186 , HOH B:2187
BINDING SITE FOR RESIDUE UAG B1498
4
AC4
SOFTWARE
TYR B:357 , HIS B:359 , GLY B:386 , ARG B:389 , ASP B:413 , ASN B:414 , ARG B:416 , GLY B:464 , GLU B:468 , UAG B:1498
BINDING SITE FOR RESIDUE API B1499
[
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_MURE_ECOLI_001 (E343K, chain A/B, )
2: VAR_MURE_ECOLI_002 (A494S, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_MURE_ECOLI_001
*
E
344
K
MURE_ECOLI
---
---
A/B
E
343
K
2
UniProt
VAR_MURE_ECOLI_002
*
A
495
S
MURE_ECOLI
---
---
A/B
A
494
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1e8ca2 (A:338-497)
1b: SCOP_d1e8cb2 (B:338-498)
2a: SCOP_d1e8ca1 (A:3-103)
2b: SCOP_d1e8cb1 (B:2-103)
3a: SCOP_d1e8ca3 (A:104-337)
3b: SCOP_d1e8cb3 (B:104-337)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
MurD-like peptide ligases, peptide-binding domain
(32)
Superfamily
:
MurD-like peptide ligases, peptide-binding domain
(32)
Family
:
MurCDEF C-terminal domain
(13)
Protein domain
:
UDP-N-acetylmuramyl tripeptide synthetase MurE
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d1e8ca2
A:338-497
1b
d1e8cb2
B:338-498
Fold
:
MurF and HprK N-domain-like
(5)
Superfamily
:
MurE/MurF N-terminal domain
(2)
Family
:
MurE/MurF N-terminal domain
(2)
Protein domain
:
UDP-N-acetylmuramyl tripeptide synthetase MurE
(1)
Escherichia coli [TaxId: 562]
(1)
2a
d1e8ca1
A:3-103
2b
d1e8cb1
B:2-103
Fold
:
Ribokinase-like
(226)
Superfamily
:
MurD-like peptide ligases, catalytic domain
(32)
Family
:
MurCDEF
(23)
Protein domain
:
UDP-N-acetylmuramyl tripeptide synthetase MurE
(1)
Escherichia coli [TaxId: 562]
(1)
3a
d1e8ca3
A:104-337
3b
d1e8cb3
B:104-337
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1e8cA02 (A:104-341)
1b: CATH_1e8cB02 (B:104-341)
2a: CATH_1e8cA01 (A:3-103)
2b: CATH_1e8cB01 (B:3-103)
3a: CATH_1e8cB03 (B:343-484)
3b: CATH_1e8cA03 (A:343-497)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
(109)
Homologous Superfamily
:
[code=3.40.1190.10, no name defined]
(36)
Escherichia coli. Organism_taxid: 562.
(2)
1a
1e8cA02
A:104-341
1b
1e8cB02
B:104-341
Topology
:
Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1
(9)
Homologous Superfamily
:
[code=3.40.1390.10, no name defined]
(2)
Escherichia coli. Organism_taxid: 562.
(1)
2a
1e8cA01
A:3-103
2b
1e8cB01
B:3-103
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
[code=3.90.190.20, no name defined]
(34)
Escherichia coli. Organism_taxid: 562.
(2)
3a
1e8cB03
B:343-484
3b
1e8cA03
A:343-497
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Pfam Domains
(0, 0)
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