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1E7Z
Asym. Unit
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Asym.Unit (35 KB)
Biol.Unit 1 (31 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EMAP2/RNA BINDING DOMAIN OF THE P43 PROTEIN FROM HUMAN AMINOACYL-TRNA SYNTHETASE COMPLEX
Authors
:
S. Pasqualato, P. Kerjan, L. Renault, J. Menetrey, M. Mirande, J. Cherfils
Date
:
13 Sep 00 (Deposition) - 27 Nov 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Rna Binding Domain, Ob-Fold, Trna Synthetase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Renault, P. Kerjan, S. Pasqualato, J. Menetrey, J. C. Robinson, S. Kawaguchi, D. G. Vassylyev, S. Yokoyama, M. Mirande, J. Cherfils
Structure Of The Emapii Domain Of Human Aminoacyl- Trna Synthetase Complex Reveals Evolutionary Dimeric Mimicry
Embo J. V. 20 570 2001
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: MERCURY (II) ION (HGa)
1b: MERCURY (II) ION (HGb)
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Label:
No.
Name
Count
Type
Full Name
1
HG
2
Ligand/Ion
MERCURY (II) ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:161 , ASN A:204 , MET A:206
BINDING SITE FOR RESIDUE HG A 500
2
AC2
SOFTWARE
GLU A:283 , CYS A:284 , ARG A:302
BINDING SITE FOR RESIDUE HG A 501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TRBD (A:151-252)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRBD
PS50886
tRNA-binding domain profile.
AIMP1_HUMAN
151-252
1
A:151-252
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Exons
(3, 3)
Info
All Exons
Exon 1.7c (A:147-201)
Exon 1.8 (A:202-258)
Exon 1.9a (A:258-312)
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All Exon Boundaries
1: Boundary 1.6/1.7c
2: Boundary 1.7c/1.8
3: Boundary 1.8/1.9a
4: Boundary 1.9a/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000358008
2
ENSE00001406774
chr4:
107236853-107237501
649
AIMP1_HUMAN
-
0
0
-
-
1.4
ENST00000358008
4
ENSE00001620810
chr4:
107246142-107246275
134
AIMP1_HUMAN
1-37
37
0
-
-
1.5
ENST00000358008
5
ENSE00001080605
chr4:
107248608-107248721
114
AIMP1_HUMAN
37-75
39
0
-
-
1.6
ENST00000358008
6
ENSE00001196296
chr4:
107249233-107249400
168
AIMP1_HUMAN
75-131
57
0
-
-
1.7c
ENST00000358008
7c
ENSE00001080606
chr4:
107252829-107253040
212
AIMP1_HUMAN
131-201
71
1
A:147-201
55
1.8
ENST00000358008
8
ENSE00001080603
chr4:
107258026-107258194
169
AIMP1_HUMAN
202-258
57
1
A:202-258
57
1.9a
ENST00000358008
9a
ENSE00001926722
chr4:
107268683-107269648
966
AIMP1_HUMAN
258-312
55
1
A:258-312
55
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1e7za_ (A:)
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)
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)
Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Myf domain
(20)
Protein domain
:
EMAP II
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1e7za_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1e7zA00 (A:147-319)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Human (Homo sapiens)
(27)
1a
1e7zA00
A:147-319
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (35 KB)
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