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1E71
Biol. Unit 1
Info
Asym.Unit (216 KB)
Biol.Unit 1 (411 KB)
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(1)
Title
:
MYROSINASE FROM SINAPIS ALBA WITH BOUND ASCORBATE
Authors
:
W. P. Burmeister
Date
:
23 Aug 00 (Deposition) - 05 Jan 01 (Release) - 30 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : M
Biol. Unit 1: M (2x)
Keywords
:
Hydrolase, Family 1 Glycosyl Hydrolase, Glucosinolate, Tim Barrel, Activation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. P. Burmeister, S. Cottaz, P. Rollin, A. Vasella, B. Henrissat
High Resolution X-Ray Crystallography Shows That Ascorbate Is A Cofactor For Myrosinase And Substitutes For The Function Of The Catalytic Base
J. Biol. Chem. V. 275 39385 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(8, 68)
Info
All Hetero Components
1a: ASCORBIC ACID (ASCa)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
7d: SULFATE ION (SO4d)
7e: SULFATE ION (SO4e)
7f: SULFATE ION (SO4f)
7g: SULFATE ION (SO4g)
7h: SULFATE ION (SO4h)
8a: BETA-D-XYLOPYRANOSE (XYPa)
8b: BETA-D-XYLOPYRANOSE (XYPb)
9a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ASC
2
Ligand/Ion
ASCORBIC ACID
2
BMA
4
Ligand/Ion
BETA-D-MANNOSE
3
FUC
4
Ligand/Ion
ALPHA-L-FUCOSE
4
GOL
10
Ligand/Ion
GLYCEROL
5
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
24
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SO4
16
Ligand/Ion
SULFATE ION
8
XYP
4
Ligand/Ion
BETA-D-XYLOPYRANOSE
9
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: ACT (AUTHOR)
11: ASC (AUTHOR)
12: BC1 (SOFTWARE)
13: BC2 (SOFTWARE)
14: BC3 (SOFTWARE)
15: BC4 (SOFTWARE)
16: BC5 (SOFTWARE)
17: BC6 (SOFTWARE)
18: BC7 (SOFTWARE)
19: BC8 (SOFTWARE)
20: BC9 (SOFTWARE)
21: CC1 (SOFTWARE)
22: CC2 (SOFTWARE)
23: CC3 (SOFTWARE)
24: CC4 (SOFTWARE)
25: CC5 (SOFTWARE)
26: CC6 (SOFTWARE)
27: ZNB (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS M:56 , ASP M:70
BINDING SITE FOR RESIDUE ZN M1503
02
AC2
SOFTWARE
ARG M:205 , HOH M:2364 , HOH M:2764 , HOH M:2765 , HOH M:2766 , HOH M:2767 , HOH M:2768
BINDING SITE FOR RESIDUE SO4 M1504
03
AC3
SOFTWARE
LYS M:108 , ARG M:111 , HOH M:2213 , HOH M:2292 , HOH M:2769 , HOH M:2770
BINDING SITE FOR RESIDUE SO4 M1505
04
AC4
SOFTWARE
ARG M:259 , GLN M:333 , SO4 M:1511 , HOH M:2771 , HOH M:2773 , HOH M:2787
BINDING SITE FOR RESIDUE SO4 M1506
05
AC5
SOFTWARE
GLN M:7 , GLU M:8 , ASN M:9 , HOH M:2009 , HOH M:2774 , HOH M:2775 , HOH M:2776 , HOH M:2777 , HOH M:2778
BINDING SITE FOR RESIDUE SO4 M1507
06
AC6
SOFTWARE
HIS M:270 , ARG M:277 , HOH M:2779 , HOH M:2780 , HOH M:2781 , HOH M:2782
BINDING SITE FOR RESIDUE SO4 M1508
07
AC7
SOFTWARE
ARG M:109 , VAL M:113 , GLU M:173 , HOH M:2204 , HOH M:2783 , HOH M:2784
BINDING SITE FOR RESIDUE SO4 M1509
08
AC8
SOFTWARE
ASN M:60 , HIS M:66 , NAG M:961 , HOH M:2785
BINDING SITE FOR RESIDUE SO4 M1510
09
AC9
SOFTWARE
ARG M:194 , ARG M:259 , SO4 M:1506 , HOH M:2760 , HOH M:2771 , HOH M:2786 , HOH M:2787 , HOH M:2788 , HOH M:2789
BINDING SITE FOR RESIDUE SO4 M1511
10
ACT
AUTHOR
GLN M:187 , GLU M:409 , TYR M:330 , GLU M:464 , GLN M:39 , HIS M:141 , ASN M:186 , TRP M:457
GLUCOSE BINDING SUBSITE OF THE ACTIVE SITE
11
ASC
AUTHOR
ARG M:259 , GLN M:187 , ILE M:257 , PHE M:331 , PHE M:371 , PHE M:473 , TYR M:330
ASCORBATE BINDING SITE
12
BC1
SOFTWARE
GLN M:187 , ILE M:257 , ARG M:259 , TYR M:330 , PHE M:331 , PHE M:473 , HOH M:2405 , HOH M:2546 , HOH M:2755 , HOH M:2756 , HOH M:2757 , HOH M:2758 , HOH M:2759 , HOH M:2760 , HOH M:2761 , HOH M:2762
BINDING SITE FOR RESIDUE ASC M 995
13
BC2
SOFTWARE
GLN M:39 , HIS M:141 , ASN M:186 , GLN M:187 , GLU M:409 , TRP M:457 , GLU M:464 , PHE M:465 , HOH M:2756 , HOH M:2763
BINDING SITE FOR RESIDUE GOL M1502
14
BC3
SOFTWARE
ASN M:316 , LEU M:317 , HOH M:2375 , HOH M:2377 , HOH M:2473 , HOH M:2790 , HOH M:2791 , HOH M:2792
BINDING SITE FOR RESIDUE GOL M1512
15
BC4
SOFTWARE
ILE M:50 , PHE M:54 , ARG M:57 , GLN M:146 , GLN M:149 , PRO M:203 , TYR M:215 , HOH M:2290 , HOH M:2296 , HOH M:2793
BINDING SITE FOR RESIDUE GOL M1513
16
BC5
SOFTWARE
HIS M:247 , GLY M:249 , GLU M:280 , GLN M:297 , ILE M:298 , HOH M:2396 , HOH M:2732 , HOH M:2794 , HOH M:2795 , HOH M:2796
BINDING SITE FOR RESIDUE GOL M1514
17
BC6
SOFTWARE
GLY M:132 , THR M:134 , NAG M:953 , BMA M:954 , HOH M:2797
BINDING SITE FOR RESIDUE GOL M1515
18
BC7
SOFTWARE
THR M:17 , ASP M:18 , ALA M:19 , ASN M:21 , SER M:24 , PRO M:501 , HOH M:2041 , HOH M:2700 , HOH M:2701 , HOH M:2702
BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 21 RESIDUES 901 TO 901
19
BC8
SOFTWARE
TYR M:58 , ASN M:60 , SER M:213 , SO4 M:1510 , HOH M:2112 , HOH M:2751 , HOH M:2752
BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 60 RESIDUES 961 TO 961
20
BC9
SOFTWARE
ASN M:90 , SER M:500 , MAN M:957 , HOH M:2703 , HOH M:2705 , HOH M:2706
BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 90 RESIDUES 911 TO 911
21
CC1
SOFTWARE
SER M:207 , ASN M:218 , THR M:221 , HOH M:2707 , HOH M:2708 , HOH M:2709 , HOH M:2710 , HOH M:2712 , HOH M:2714
BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 218 RESIDUES 921 TO 923
22
CC2
SOFTWARE
LYS M:165 , LEU M:240 , ASN M:244 , HOH M:2379
BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 244 RESIDUES 931 TO 931
23
CC3
SOFTWARE
ASN M:265 , ASP M:268 , ASN M:316 , LYS M:319 , ALA M:362 , HOH M:2417 , HOH M:2474 , HOH M:2717 , HOH M:2719 , HOH M:2720 , HOH M:2721 , HOH M:2722 , HOH M:2723 , HOH M:2724 , HOH M:2725
BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 265 RESIDUES 941 TO 945
24
CC4
SOFTWARE
THR M:92 , ILE M:129 , GLY M:132 , ASN M:292 , THR M:294 , GLN M:297 , ILE M:300 , NAG M:911 , GOL M:1515 , HOH M:2260 , HOH M:2335 , HOH M:2436 , HOH M:2439 , HOH M:2727 , HOH M:2728 , HOH M:2729 , HOH M:2731 , HOH M:2732 , HOH M:2733 , HOH M:2734 , HOH M:2735 , HOH M:2736 , HOH M:2737 , HOH M:2739 , HOH M:2742 , HOH M:2743 , HOH M:2744 , HOH M:2745 , HOH M:2746 , HOH M:2747 , HOH M:2748 , HOH M:2749 , HOH M:2750 , HOH M:2795
BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 292 RESIDUES 951 TO 957
25
CC5
SOFTWARE
ASN M:346 , HOH M:2513 , HOH M:2753
BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 346 RESIDUES 971 TO 971
26
CC6
SOFTWARE
ASN M:482 , ASP M:485 , HOH M:2676
BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M 482 RESIDUES 991 TO 991
27
ZNB
AUTHOR
HIS M:56 , ASP M:70
ZN BINDING SITE TOGETHER WITH THE SYMMETRY-RELATED EQUIVALENTS.
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F1_2 (M:29-43)
2: GLYCOSYL_HYDROL_F1_1 (M:405-413)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F1_2
PS00653
Glycosyl hydrolases family 1 N-terminal signature.
MYRA_SINAL
29-43
2
M:29-43
2
GLYCOSYL_HYDROL_F1_1
PS00572
Glycosyl hydrolases family 1 active site.
MYRA_SINAL
405-413
2
M:405-413
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1e71m_ (M:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Family 1 of glycosyl hydrolase
(102)
Protein domain
:
Plant beta-glucosidase (myrosinase)
(30)
White mustard (Sinapis alba) [TaxId: 3728]
(18)
1a
d1e71m_
M:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1e71M00 (M:3-501)
View:
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Classes
(
)
(
)
Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
White mustard (Sinapis alba)
(18)
1a
1e71M00
M:3-501
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
Chain M
Asymmetric Unit 1
Asymmetric Unit 2
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