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1E6V
Asym. Unit
Info
Asym.Unit (391 KB)
Biol.Unit 1 (383 KB)
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(1)
Title
:
METHYL-COENZYME M REDUCTASE FROM METHANOPYRUS KANDLERI
Authors
:
W. Grabarse, U. Ermler
Date
:
23 Aug 00 (Deposition) - 18 Oct 00 (Release) - 29 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Biological Methanogenesis, Ni-Enzyme, Oxidoreductase, Ni Enzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Grabarse, F. Mahlert, S. Shima, R. K. Thauer, U. Ermler
Comparison Of Three Methyl-Coenzyme M Reductases From Phylogenetically Distant Organisms: Unusual Amino Acid Modification, Conservation And Adaptation
J. Mol. Biol. V. 303 329 2000
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: 1-THIOETHANESULFONIC ACID (COMa)
1b: 1-THIOETHANESULFONIC ACID (COMb)
2a: FACTOR 430 (F43a)
2b: FACTOR 430 (F43b)
3a: COENZYME B (TP7a)
3b: COENZYME B (TP7b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
COM
2
Ligand/Ion
1-THIOETHANESULFONIC ACID
2
F43
2
Ligand/Ion
FACTOR 430
3
TP7
2
Ligand/Ion
COENZYME B
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:147 , VAL A:148 , VAL A:149 , GLN A:150 , MET A:153 , GLN A:233 , MET A:236 , ALA A:246 , COM A:1555 , GLY D:329 , GLY D:330 , VAL D:331 , GLY D:332 , PHE D:333 , THR D:334 , GLN D:335 , TYR D:336 , PHE D:399 , GLY D:400 , PHE D:446 , SER E:366 , ILE E:367 , TYR E:368 , SER F:122 , GLY F:123 , ARG F:124 , ALA F:157 , THR F:158 , VAL F:159 , HIS F:160 , HIS F:162
BINDING SITE FOR RESIDUE F43 A 1553
2
AC2
SOFTWARE
ARG A:273 , LEU A:323 , MET A:327 , SER A:328 , PHE A:446 , MET A:483 , ASN A:484 , VAL A:485 , TYR B:368 , GLY B:370 , HIS B:380 , VAL B:382 , ARG D:228 , LYS D:259 , HIS D:260
BINDING SITE FOR RESIDUE TP7 A 1554
3
AC3
SOFTWARE
F43 A:1553 , TYR D:336 , PHE D:446 , TYR D:447 , PHE E:362 , TYR E:368 , LEU F:121 , ARG F:124
BINDING SITE FOR RESIDUE COM A 1555
4
AC4
SOFTWARE
GLY A:329 , GLY A:330 , VAL A:331 , GLY A:332 , PHE A:333 , THR A:334 , GLN A:335 , TYR A:336 , PHE A:399 , GLY A:400 , PHE A:446 , SER B:366 , ILE B:367 , TYR B:368 , SER C:122 , GLY C:123 , ARG C:124 , ALA C:157 , THR C:158 , VAL C:159 , HIS C:160 , HIS C:162 , ALA D:147 , VAL D:148 , VAL D:149 , GLN D:150 , MET D:153 , GLN D:233 , MET D:236 , ALA D:246 , COM D:1555
BINDING SITE FOR RESIDUE F43 D 1553
5
AC5
SOFTWARE
ARG A:228 , LYS A:259 , HIS A:260 , ARG D:273 , LEU D:323 , MET D:327 , SER D:328 , PHE D:446 , MET D:483 , ASN D:484 , VAL D:485 , TYR E:368 , GLY E:370 , HIS E:380 , VAL E:382
BINDING SITE FOR RESIDUE TP7 D 1554
6
AC6
SOFTWARE
TYR A:336 , PHE A:446 , TYR A:447 , PHE B:362 , TYR B:368 , LEU C:121 , ARG C:124 , F43 D:1553
BINDING SITE FOR RESIDUE COM D 1555
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(5, 10)
Info
All SCOP Domains
1a: SCOP_d1e6va1 (A:273-552)
1b: SCOP_d1e6vd1 (D:273-552)
2a: SCOP_d1e6vb1 (B:190-442)
2b: SCOP_d1e6ve1 (E:190-442)
3a: SCOP_d1e6va2 (A:8-272)
3b: SCOP_d1e6vd2 (D:8-272)
4a: SCOP_d1e6vb2 (B:7-189)
4b: SCOP_d1e6ve2 (E:7-189)
5a: SCOP_d1e6vc_ (C:)
5b: SCOP_d1e6vf_ (F:)
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)
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
(28)
Superfamily
:
Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
(28)
Family
:
Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
(26)
Protein domain
:
Alpha chain
(13)
Methanopyrus kandleri [TaxId: 2320]
(1)
1a
d1e6va1
A:273-552
1b
d1e6vd1
D:273-552
Protein domain
:
Beta chain
(13)
Methanopyrus kandleri [TaxId: 2320]
(1)
2a
d1e6vb1
B:190-442
2b
d1e6ve1
E:190-442
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Methyl-coenzyme M reductase subunits
(42)
Family
:
Methyl-coenzyme M reductase alpha and beta chain N-terminal domain
(26)
Protein domain
:
Alpha chain
(13)
Methanopyrus kandleri [TaxId: 2320]
(1)
3a
d1e6va2
A:8-272
3b
d1e6vd2
D:8-272
Protein domain
:
Beta chain
(13)
Methanopyrus kandleri [TaxId: 2320]
(1)
4a
d1e6vb2
B:7-189
4b
d1e6ve2
E:7-189
Family
:
Methyl-coenzyme M reductase gamma chain
(14)
Protein domain
:
Methyl-coenzyme M reductase gamma chain
(14)
Methanopyrus kandleri [TaxId: 2320]
(1)
5a
d1e6vc_
C:
5b
d1e6vf_
F:
[
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CATH Domains
(4, 12)
Info
all CATH domains
1a: CATH_1e6vA02 (A:105-279)
1b: CATH_1e6vD02 (D:105-279)
1c: CATH_1e6vB01 (B:46-192)
1d: CATH_1e6vE01 (E:46-192)
2a: CATH_1e6vC00 (C:7-254)
2b: CATH_1e6vF00 (F:7-254)
3a: CATH_1e6vA01 (A:8-104)
3b: CATH_1e6vD01 (D:8-104)
4a: CATH_1e6vA03 (A:280-509)
4b: CATH_1e6vD03 (D:280-509)
4c: CATH_1e6vB02 (B:7-45,B:193-442)
4d: CATH_1e6vE02 (E:7-45,E:193-442)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.470, no name defined]
(7)
Methanopyrus kandleri. Organism_taxid: 2320.
(1)
1a
1e6vA02
A:105-279
1b
1e6vD02
D:105-279
1c
1e6vB01
B:46-192
1d
1e6vE01
E:46-192
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Lambda Exonuclease; Chain A
(10)
Homologous Superfamily
:
[code=3.90.320.20, no name defined]
(7)
Methanopyrus kandleri. Organism_taxid: 2320.
(1)
2a
1e6vC00
C:7-254
2b
1e6vF00
F:7-254
Topology
:
Methyl-coenzyme M Reductase; Chain A, domain 1
(7)
Homologous Superfamily
:
Methyl-coenzyme M Reductase; Chain A, domain 1
(7)
Methanopyrus kandleri. Organism_taxid: 2320.
(1)
3a
1e6vA01
A:8-104
3b
1e6vD01
D:8-104
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Methyl-coenzyme M Reductase; Chain B, domain 2
(7)
Homologous Superfamily
:
Methyl-coenzyme M Reductase; Chain B, domain 2
(7)
Methanopyrus kandleri. Organism_taxid: 2320.
(1)
4a
1e6vA03
A:280-509
4b
1e6vD03
D:280-509
4c
1e6vB02
B:7-45,B:193-442
4d
1e6vE02
E:7-45,E:193-442
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Pfam Domains
(0, 0)
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