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1E6P
Biol. Unit 3
Info
Asym.Unit (191 KB)
Biol.Unit 1 (185 KB)
Biol.Unit 2 (94 KB)
Biol.Unit 3 (96 KB)
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(1)
Title
:
CHITINASE B FROM SERRATIA MARCESCENS INACTIVE MUTANT E144Q
Authors
:
D. Komander, B. Synstad, V. G. H. Eijsink, D. M. F. Van Aalten
Date
:
22 Aug 00 (Deposition) - 22 Jun 01 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Chitin Degradation, Hydrolase, Glycosidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. F. Van Aalten, D. Komander, B. Synstad, S. Gseidnes, M. G. Peter, V. G. H. Eijsink
Structural Insights Into The Catalytic Mechanism Of A Family 18 Exo-Chitinase
Proc. Natl. Acad. Sci. Usa V. 98 8979 2001
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC6 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:420 , HOH A:2419 , HOH A:2483 , HOH A:2485 , LYS B:386 , ARG B:420
BINDING SITE FOR RESIDUE SO4 A1510
02
AC2
SOFTWARE
GLU A:383 , LYS A:386 , ARG B:420 , ASP B:426 , HOH B:2620 , HOH B:2621 , HOH B:2622 , HOH B:2623
BINDING SITE FOR RESIDUE SO4 B1507
03
AC3
SOFTWARE
THR B:26 , ARG B:343 , ARG B:410 , HOH B:2502 , HOH B:2624 , HOH B:2625 , HOH B:2626 , HOH B:2627
BINDING SITE FOR RESIDUE SO4 B1508
04
AC6
SOFTWARE
GLU A:221 , PHE A:239 , GOL A:1502 , GOL A:1505 , HOH A:2475 , HOH A:2476 , GLY B:480
BINDING SITE FOR RESIDUE GOL A1501
05
BC1
SOFTWARE
PHE A:190 , ARG A:194 , GOL A:1501 , TRP B:479 , ILE B:482 , THR B:483 , SER B:484 , HOH B:2599
BINDING SITE FOR RESIDUE GOL A1505
06
BC4
SOFTWARE
TRP A:97 , TRP A:220 , GOL A:1502 , GOL A:1509 , HOH A:2482 , TYR B:481
BINDING SITE FOR RESIDUE GOL A1508
07
BC6
SOFTWARE
GLY A:480 , TYR A:481 , GLU B:221 , PHE B:239 , GOL B:1501 , HOH B:2608 , HOH B:2609
BINDING SITE FOR RESIDUE GOL B1500
08
BC7
SOFTWARE
TRP A:479 , TYR A:481 , ILE A:482 , THR A:483 , ASP A:489 , PHE B:190 , PHE B:191 , ARG B:194 , GOL B:1500
BINDING SITE FOR RESIDUE GOL B1501
09
BC8
SOFTWARE
THR B:3 , ARG B:4 , THR B:45 , HIS B:46 , ARG B:89 , HOH B:2170 , HOH B:2320 , HOH B:2611
BINDING SITE FOR RESIDUE GOL B1502
10
BC9
SOFTWARE
ASP B:142 , GLN B:144 , MET B:212 , TYR B:214 , TRP B:403 , HOH B:2612 , HOH B:2613
BINDING SITE FOR RESIDUE GOL B1503
11
CC1
SOFTWARE
ARG B:162 , ALA B:204 , ASP B:207 , LYS B:284 , HOH B:2475
BINDING SITE FOR RESIDUE GOL B1504
12
CC2
SOFTWARE
PRO B:260 , PHE B:263 , SER B:264 , ARG B:439 , TYR B:440 , THR B:441 , HOH B:2616 , HOH B:2617
BINDING SITE FOR RESIDUE GOL B1505
13
CC3
SOFTWARE
TYR B:323 , VAL B:326 , GLY B:327 , CYS B:328 , GLU B:329 , VAL B:332 , HOH B:2424 , HOH B:2427 , HOH B:2618 , HOH B:2619
BINDING SITE FOR RESIDUE GOL B1506
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1e6pa1 (A:447-498)
1b: SCOP_d1e6pb1 (B:447-499)
2a: SCOP_d1e6pa3 (A:292-379)
2b: SCOP_d1e6pb3 (B:292-379)
3a: SCOP_d1e6pa2 (A:2-291,A:380-446)
3b: SCOP_d1e6pb2 (B:3-291,B:380-446)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
WW domain-like
(101)
Superfamily
:
Carbohydrate binding domain
(20)
Family
:
Carbohydrate binding domain
(20)
Protein domain
:
Chitinase B, C-terminal domain
(18)
Serratia marcescens [TaxId: 615]
(18)
1a
d1e6pa1
A:447-498
1b
d1e6pb1
B:447-499
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
Chitinase insertion domain
(107)
Family
:
Chitinase insertion domain
(107)
Protein domain
:
Chitinase B
(18)
Serratia marcescens [TaxId: 615]
(18)
2a
d1e6pa3
A:292-379
2b
d1e6pb3
B:292-379
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Type II chitinase
(131)
Protein domain
:
Chitinase B, catalytic domain
(18)
Serratia marcescens [TaxId: 615]
(18)
3a
d1e6pa2
A:2-291,A:380-446
3b
d1e6pb2
B:3-291,B:380-446
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1e6pA01 (A:2-290,A:381-448)
1b: CATH_1e6pB01 (B:3-290,B:381-448)
2a: CATH_1e6pA02 (A:291-380)
2b: CATH_1e6pB02 (B:291-380)
3a: CATH_1e6pA03 (A:449-499)
3b: CATH_1e6pB03 (B:449-499)
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(
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Serratia marcescens. Organism_taxid: 615.
(19)
1a
1e6pA01
A:2-290,A:381-448
1b
1e6pB01
B:3-290,B:381-448
Architecture
:
Roll
(3276)
Topology
:
Chitinase A; domain 3
(225)
Homologous Superfamily
:
[code=3.10.50.10, no name defined]
(121)
Serratia marcescens. Organism_taxid: 615.
(17)
2a
1e6pA02
A:291-380
2b
1e6pB02
B:291-380
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Seminal Fluid Protein PDC-109 (Domain B)
(33)
Homologous Superfamily
:
[code=2.10.10.20, no name defined]
(20)
Serratia marcescens. Organism_taxid: 615.
(13)
3a
1e6pA03
A:449-499
3b
1e6pB03
B:449-499
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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Asym.Unit (191 KB)
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Biol.Unit 3 (96 KB)
Header - Biol.Unit 3
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