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1E5E
Biol. Unit 1
Info
Asym.Unit (147 KB)
Biol.Unit 1 (277 KB)
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(1)
Title
:
METHIONINE GAMMA-LYASE (MGL) FROM TRICHOMONAS VAGINALIS IN COMPLEX WITH PROPARGYLGLYCINE
Authors
:
G. Goodall, J. C. Mottram, G. H. Coombs, A. J. Lapthorn
Date
:
25 Jul 00 (Deposition) - 19 Jul 01 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.18
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Methionine Biosynthesis, Plp-Dependent Enzymes, C-S Gamma Lyase, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Goodall, J. C. Mottram, G. H. Coombs, A. J. Lapthorn
The Structure And Proposed Catalytic Mechanism Of Methionine Gamma-Lyase
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: N-(HYDROXY{3-HYDROXY-2-METHYL-5-[(... (PPJa)
2b: N-(HYDROXY{3-HYDROXY-2-METHYL-5-[(... (PPJb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
PPJ
4
Ligand/Ion
N-(HYDROXY{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)NORVALINE
3
SO4
10
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:298 , LYS A:302 , TYR A:308
BINDING SITE FOR RESIDUE SO4 A 408
2
AC2
SOFTWARE
LYS A:286 , ASP A:294 , HOH A:2426 , HOH A:2427
BINDING SITE FOR RESIDUE SO4 A 409
3
AC3
SOFTWARE
GLN A:128 , LYS A:145 , PRO B:358 , LYS B:359 , ARG B:362 , HOH B:2416 , HOH B:2417
BINDING SITE FOR RESIDUE SO4 B 406
4
AC4
SOFTWARE
GLU B:276 , LYS B:279 , PHE B:292 , GLU B:293 , ASP B:294
BINDING SITE FOR RESIDUE SO4 B 407
5
AC5
SOFTWARE
VAL B:284 , LYS B:317
BINDING SITE FOR RESIDUE SO4 B 410
6
AC6
SOFTWARE
SER A:85 , GLY A:86 , MET A:87 , TYR A:111 , ASN A:158 , ASP A:184 , SER A:206 , THR A:208 , LYS A:209 , ALA A:219 , SER A:338 , THR A:353 , ARG A:373 , TYR B:56 , ARG B:58
BINDING SITE FOR RESIDUE PPJ A 405
7
AC7
SOFTWARE
TYR A:56 , ARG A:58 , SER B:85 , GLY B:86 , MET B:87 , TYR B:111 , ASN B:158 , ASP B:184 , SER B:206 , THR B:208 , LYS B:209 , SER B:338 , THR B:353 , ARG B:373
BINDING SITE FOR RESIDUE PPJ B 405
8
AC8
SOFTWARE
THR A:57 , ARG A:58 , LEU A:59 , ALA A:82 , ARG A:233 , SER A:243 , VAL A:244 , ILE A:245 , HOH A:2132 , HOH A:2428
BINDING SITE FOR RESIDUE GOL A 411
9
AC9
SOFTWARE
GLY B:291 , GLU B:293 , HIS B:298 , LYS B:302 , TYR B:308 , HOH B:2418 , HOH B:2419
BINDING SITE FOR RESIDUE GOL B 412
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1e5ea_ (A:)
1b: SCOP_d1e5eb_ (B:)
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Protein Domains
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
Cystathionine synthase-like
(64)
Protein domain
:
Methionine gamma-lyase, MGL
(14)
Trichomonas vaginalis, MGL1 [TaxId: 5722]
(2)
1a
d1e5ea_
A:
1b
d1e5eb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1e5eA01 (A:6-260)
1b: CATH_1e5eB01 (B:6-260)
2a: CATH_1e5eA02 (A:261-397)
2b: CATH_1e5eB02 (B:261-396)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Trichomonas vaginalis. Organism_taxid: 412133. Strain: g3.
(2)
1a
1e5eA01
A:6-260
1b
1e5eB01
B:6-260
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Trichomonas vaginalis. Organism_taxid: 412133. Strain: g3.
(2)
2a
1e5eA02
A:261-397
2b
1e5eB02
B:261-396
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Pfam Domains
(0, 0)
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Asym.Unit (147 KB)
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