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1E51
Asym. Unit
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Asym.Unit (95 KB)
Biol.Unit 1 (348 KB)
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Title
:
CRYSTAL STRUCTURE OF NATIVE HUMAN ERYTHROCYTE 5-AMINOLAEVULINIC ACID DEHYDRATASE
Authors
:
N. L. Mills-Davies, D. Thompson, J. B. Cooper, P. M. Shoolingin-Jorda
Date
:
13 Jul 00 (Deposition) - 12 Jul 01 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.83
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (4x)
Keywords
:
Dehydratase, Tetrapyrrole Biosynthesis, Tim Barrel, Porphobilinogen Synthase, Lead Poisoning, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. L. Mills-Davies, D. Thompson, J. B. Cooper, S. P. Wood, P. M. Shoolingin-Jordan
The Crystal Structure Of Human Ala-Dehydratase
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: 3-[5-(AMINOMETHYL)-4-(CARBOXYMETHY... (PBGa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
PBG
1
Ligand/Ion
3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL]PROPANOIC ACID
2
SO4
2
Ligand/Ion
SULFATE ION
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:122 , CYS A:124 , CYS A:132 , PBG A:500
BINDING SITE FOR RESIDUE ZN A 501
2
AC2
SOFTWARE
ARG A:17 , ARG B:222
BINDING SITE FOR RESIDUE SO4 A 502
3
AC3
SOFTWARE
PRO B:14 , ARG B:17
BINDING SITE FOR RESIDUE SO4 B 503
4
AC4
SOFTWARE
CYS A:124 , SER A:168 , LYS A:199 , TYR A:205 , PHE A:208 , ARG A:209 , ARG A:221 , GLN A:225 , LYS A:252 , VAL A:278 , SER A:279 , TYR A:318 , ZN A:501
BINDING SITE FOR RESIDUE PBG A 500
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SAPs(SNPs)/Variants
(7, 13)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020973 (F12L, chain A/B, )
2: VAR_003633 (K59N, chain A/B, )
3: VAR_003634 (G133R, chain A, )
4: VAR_020974 (V153M, chain A/B, )
5: VAR_003635 (R240W, chain A/B, )
6: VAR_003636 (A274T, chain A/B, )
7: VAR_003637 (V275M, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020973
F
12
L
HEM2_HUMAN
Unclassified
---
A/B
F
12
L
2
UniProt
VAR_003633
K
59
N
HEM2_HUMAN
Polymorphism
1800435
A/B
K
59
N
3
UniProt
VAR_003634
G
133
R
HEM2_HUMAN
Disease (AHEPP)
---
A
G
133
R
4
UniProt
VAR_020974
V
153
M
HEM2_HUMAN
Disease (AHEPP)
---
A/B
V
153
M
5
UniProt
VAR_003635
R
240
W
HEM2_HUMAN
Disease (AHEPP)
---
A/B
R
240
W
6
UniProt
VAR_003636
A
274
T
HEM2_HUMAN
Disease (AHEPP)
---
A/B
A
274
T
7
UniProt
VAR_003637
V
275
M
HEM2_HUMAN
Disease (AHEPP)
---
A/B
V
275
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: D_ALA_DEHYDRATASE (A:245-257,B:245-257)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
D_ALA_DEHYDRATASE
PS00169
Delta-aminolevulinic acid dehydratase active site.
HEM2_HUMAN
245-257
2
A:245-257
B:245-257
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1e51a_ (A:)
1b: SCOP_d1e51b_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
(36)
Protein domain
:
5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
(21)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1e51a_
A:
1b
d1e51b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1e51B00 (B:1-328)
1b: CATH_1e51A00 (A:1-328)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
1e51B00
B:1-328
1b
1e51A00
A:1-328
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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