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1E50
Asym. Unit
Info
Asym.Unit (204 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (44 KB)
Biol.Unit 3 (43 KB)
Biol.Unit 4 (44 KB)
Biol.Unit 5 (20 KB)
Biol.Unit 6 (20 KB)
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(1)
Title
:
AML1/CBF COMPLEX
Authors
:
A. J. Warren, J. Bravo, R. L. Williams, T. H. Rabbits
Date
:
13 Jul 00 (Deposition) - 12 Jul 01 (Release) - 09 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,Q,R
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: Q (1x)
Biol. Unit 6: R (1x)
Keywords
:
Transcription Factor, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Warren, J. Bravo, R. L. Williams, T. H. Rabbits
Structural Basis For The Heterodimeric Interaction Between The Acute Leukaemia-Associated Transcription Factors Aml1 And Cbfbeta
Embo J. V. 19 3004 2000
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(4, 17)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036226 (P100A, chain B/D/F/H, )
2: VAR_PEBB_HUMAN_CCDS10827_1_01 (P100A, chain B/D/F/H, )
3: VAR_012128 (R139Q, chain A/C/E/G/Q/R, )
4: VAR_012129 (R174Q, chain C/E/G, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036226
P
100
A
PEBB_HUMAN
Unclassified
---
B/D/F/H
P
100
A
2
CancerSNP
VAR_PEBB_HUMAN_CCDS10827_1_01
*
P
100
A
PEBB_HUMAN
Disease (Breast cancer)
---
B/D/F/H
P
100
A
3
UniProt
VAR_012128
R
139
Q
RUNX1_HUMAN
Disease (FPDMM)
---
A/C/E/G/Q/R
R
139
Q
4
UniProt
VAR_012129
R
174
Q
RUNX1_HUMAN
Disease (FPDMM)
---
C/E/G
R
174
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Label:
End label:
Sorry, no Info available
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Exons
(9, 39)
Info
All Exons
Exon 1.1 (B:2-26 | D:2-26 | F:2-26 | H:2-26)
Exon 1.2 (B:27-55 | D:27-55 | F:27-55 | H:27...)
Exon 1.3 (B:56-94 (gaps) | D:56-94 (gaps) | ...)
Exon 1.4 (B:95-133 | D:95-133 | F:95-133 | H...)
Exon 1.5b (B:134-135 | D:134-135 | F:134-135 ...)
Exon 2.18a (A:59-90 | C:54-90 | E:57-90 | G:57...)
Exon 2.19c (A:91-143 | C:91-143 | E:91-143 | G...)
Exon 2.20a (A:143-173 | C:143-178 | E:143-175 ...)
Exon 2.22a (- | C:178-178 | - | - | - | -)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5b
06: Boundary 1.5b/1.6b
07: Boundary -/2.18a
08: Boundary 2.18a/2.19c
09: Boundary 2.19c/2.20a
10: Boundary 2.20a/2.22a
11: Boundary 2.22a/2.25
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000290858
1
ENSE00001297396
chr16:
67063050-67063388
339
PEBB_HUMAN
1-26
26
4
B:2-26
D:2-26
F:2-26
H:2-26
25
25
25
25
1.2
ENST00000290858
2
ENSE00000688453
chr16:
67063630-67063716
87
PEBB_HUMAN
27-55
29
4
B:27-55
D:27-55
F:27-55
H:27-55
29
29
29
29
1.3
ENST00000290858
3
ENSE00000688463
chr16:
67070542-67070658
117
PEBB_HUMAN
56-94
39
4
B:56-94 (gaps)
D:56-94 (gaps)
F:56-94 (gaps)
H:56-94 (gaps)
39
39
39
39
1.4
ENST00000290858
4
ENSE00001046833
chr16:
67100585-67100701
117
PEBB_HUMAN
95-133
39
4
B:95-133
D:95-133
F:95-133
H:95-133
39
39
39
39
1.5b
ENST00000290858
5b
ENSE00001301640
chr16:
67116116-67116242
127
PEBB_HUMAN
134-176
43
4
B:134-135
D:134-135
F:134-135
H:134-135
2
2
2
2
1.6b
ENST00000290858
6b
ENSE00001597074
chr16:
67132613-67134961
2349
PEBB_HUMAN
176-182
7
0
-
-
2.18a
ENST00000344691
18a
ENSE00001380483
chr21:
36260987-36259140
1848
RUNX1_HUMAN
1-90
90
6
A:59-90
C:54-90
E:57-90
G:57-90
Q:62-90
R:62-90
32
37
34
34
29
29
2.19c
ENST00000344691
19c
ENSE00001660291
chr21:
36253010-36252854
157
RUNX1_HUMAN
91-143
53
6
A:91-143
C:91-143
E:91-143
G:91-143
Q:91-143
R:91-143
53
53
53
53
53
53
2.20a
ENST00000344691
20a
ENSE00002199204
chr21:
36231875-36231771
105
RUNX1_HUMAN
143-178
36
6
A:143-173
C:143-178
E:143-175
G:143-175
Q:143-171
R:143-171
31
36
33
33
29
29
2.22a
ENST00000344691
22a
ENSE00002198909
chr21:
36206898-36206707
192
RUNX1_HUMAN
178-242
65
1
-
C:178-178
-
-
-
-
-
1
-
-
-
-
2.25
ENST00000344691
25
ENSE00002149931
chr21:
36171759-36171598
162
RUNX1_HUMAN
242-296
55
0
-
-
2.26e
ENST00000344691
26e
ENSE00001623427
chr21:
36164907-36160098
4810
RUNX1_HUMAN
296-453
158
0
-
-
[
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]
SCOP Domains
(2, 10)
Info
All SCOP Domains
1a: SCOP_d1e50a_ (A:)
1b: SCOP_d1e50c_ (C:)
1c: SCOP_d1e50e_ (E:)
1d: SCOP_d1e50g_ (G:)
1e: SCOP_d1e50q_ (Q:)
1f: SCOP_d1e50r_ (R:)
2a: SCOP_d1e50b_ (B:)
2b: SCOP_d1e50d_ (D:)
2c: SCOP_d1e50f_ (F:)
2d: SCOP_d1e50h_ (H:)
View:
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Classes
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)
(
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
p53-like transcription factors
(153)
Family
:
RUNT domain
(12)
Protein domain
:
Acute myeloid leukemia 1 protein (AML1), RUNT domain
(11)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1e50a_
A:
1b
d1e50c_
C:
1c
d1e50e_
E:
1d
d1e50g_
G:
1e
d1e50q_
Q:
1f
d1e50r_
R:
Fold
:
Core binding factor beta, CBF
(6)
Superfamily
:
Core binding factor beta, CBF
(6)
Family
:
Core binding factor beta, CBF
(6)
Protein domain
:
Core binding factor beta, CBF
(6)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1e50b_
B:
2b
d1e50d_
D:
2c
d1e50f_
F:
2d
d1e50h_
H:
[
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CATH Domains
(2, 10)
Info
all CATH domains
1a: CATH_1e50B00 (B:2-135)
1b: CATH_1e50H00 (H:2-135)
1c: CATH_1e50D00 (D:2-135)
1d: CATH_1e50F00 (F:2-135)
2a: CATH_1e50C00 (C:54-178)
2b: CATH_1e50E00 (E:57-175)
2c: CATH_1e50G00 (G:57-175)
2d: CATH_1e50A00 (A:59-173)
2e: CATH_1e50Q00 (Q:62-171)
2f: CATH_1e50R00 (R:62-171)
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Classes
(
)
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Polyomavirus Enhancer Binding Protein 2; Chain: A;
(6)
Homologous Superfamily
:
[code=2.40.250.10, no name defined]
(6)
Human (Homo sapiens)
(3)
1a
1e50B00
B:2-135
1b
1e50H00
H:2-135
1c
1e50D00
D:2-135
1d
1e50F00
F:2-135
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.720, no name defined]
(49)
Human (Homo sapiens)
(29)
2a
1e50C00
C:54-178
2b
1e50E00
E:57-175
2c
1e50G00
G:57-175
2d
1e50A00
A:59-173
2e
1e50Q00
Q:62-171
2f
1e50R00
R:62-171
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Pfam Domains
(0, 0)
Info
all PFAM domains
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