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1E4W
Asym. Unit
Info
Asym.Unit (82 KB)
Biol.Unit 1 (77 KB)
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(1)
Title
:
CROSSREACTIVE BINDING OF A CIRCULARIZED PEPTIDE TO AN ANTI-TGFALPHA ANTIBODY FAB-FRAGMENT
Authors
:
M. Hahn, D. Winkler, R. Misselwitz, H. Wessner, K. Welfle, G. Zahn, J. Schneider-Mergener, W. Hoehne
Date
:
12 Jul 00 (Deposition) - 12 Jul 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : H,L,P
Biol. Unit 1: H,L,P (1x)
Keywords
:
Immune System, Complex (Antibody/Antigen), Cross-Reactivity, Protein-Peptide Recognition
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hahn, D. Winkler, K. Welfle, R. Misselwitz, H. Welfle, H. Wessner, G. Zahn, C. Scholz, M. Seifert, R. Harkins, J. Schneider-Mergener, W. Hoehne
Cross-Reactive Binding Of Cyclic Peptides To An Anti-Tgf Alpha Antibody Fab Fragment: An X-Ray Structural And Thermodynamic Analysis
J. Mol. Biol. V. 314 293 2001
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: NICKEL (II) ION (NIa)
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
NI
1
Ligand/Ion
NICKEL (II) ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP L:1 , HIS L:189 , HOH L:2003 , HOH L:2009
BINDING SITE FOR RESIDUE NI L 901
2
AC2
SOFTWARE
ARG H:56 , ASN H:58 , HOH H:2017 , ASN P:4
BINDING SITE FOR RESIDUE CL P 901
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (L:192-198)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
1
L:192-198
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1e4wh2 (H:111-209)
2a: SCOP_d1e4wl2 (L:108-214)
3a: SCOP_d1e4wh1 (H:1-110)
4a: SCOP_d1e4wl1 (L:1-107)
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)
Protein Domains
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)
(
)
Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1e4wh2
H:111-209
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
2a
d1e4wl2
L:108-214
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
3a
d1e4wh1
H:1-110
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
4a
d1e4wl1
L:1-107
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1e4wL02 (L:109-211)
1b: CATH_1e4wH02 (H:111-209)
1c: CATH_1e4wH01 (H:1-110)
1d: CATH_1e4wL01 (L:1-108)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1e4wL02
L:109-211
1b
1e4wH02
H:111-209
1c
1e4wH01
H:1-110
1d
1e4wL01
L:1-108
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Pfam Domains
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Asym.Unit (82 KB)
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