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1E4D
Biol. Unit 2
Info
Asym.Unit (352 KB)
Biol.Unit 1 (175 KB)
Biol.Unit 2 (177 KB)
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(1)
Title
:
STRUCTURE OF OXA10 BETA-LACTAMASE AT PH 8.3
Authors
:
L. Maveyraud, D. Golemi, L. P. Kotra, S. Tranier, S. Vakulenko, S. Mobashery, J. P. Samama
Date
:
03 Jul 00 (Deposition) - 12 Jan 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Beta-Lactamase, Antiobitic Resistance
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Maveyraud, D. Golemi, L. P. Kotra, S. Tranier, S. Vakulenko, S. Mobashery, J. P. Samama
Insights Into Class D Beta-Lactamases Are Revealed By The Crystal Structure Of The Oxa10 Enzyme From Pseudomonas Aeruginosa
Structure V. 8 1289 2000
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
2b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
2c: LYSINE NZ-CARBOXYLIC ACID (KCXc)
2d: LYSINE NZ-CARBOXYLIC ACID (KCXd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
2
KCX
2
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
3
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(13, 13)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC3 (SOFTWARE)
13: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
ASN B:85 , HOH B:2243 , HOH B:2244 , ASN D:176 , LYS D:182 , HOH D:2171
BINDING SITE FOR RESIDUE SO4 B 901
02
AC6
SOFTWARE
PRO B:198 , GLU B:199 , GLU B:227 , GLU B:229 , HOH B:2245 , HOH B:2246 , THR D:107 , ARG D:109
BINDING SITE FOR RESIDUE SO4 B 902
03
AC7
SOFTWARE
SER B:67 , SER B:115 , LYS B:205 , THR B:206 , GLY B:207 , PHE B:208 , ARG B:250 , HOH B:2198 , HOH B:2247
BINDING SITE FOR RESIDUE SO4 B 903
04
AC8
SOFTWARE
ARG B:160
BINDING SITE FOR RESIDUE SO4 B 904
05
AC9
SOFTWARE
THR B:80 , ARG B:131 , LYS B:134 , TYR B:135
BINDING SITE FOR RESIDUE SO4 B 905
06
BC3
SOFTWARE
HOH B:2101 , HOH B:2105 , MET C:99 , LYS C:100 , GLN C:101 , HOH C:2216
BINDING SITE FOR RESIDUE SO4 C 903
07
BC5
SOFTWARE
LYS A:95 , SER D:67 , SER D:115 , LYS D:205 , THR D:206 , GLY D:207 , PHE D:208 , ARG D:250 , HOH D:2246
BINDING SITE FOR RESIDUE SO4 D 901
08
BC6
SOFTWARE
THR D:206 , LEU D:247 , PRO D:248 , ARG D:250 , LYS D:251
BINDING SITE FOR RESIDUE SO4 D 902
09
BC7
SOFTWARE
GLU B:183 , SER D:181 , LYS D:182 , HOH D:2247 , HOH D:2248
BINDING SITE FOR RESIDUE SO4 D 903
10
BC9
SOFTWARE
GLU B:195 , TYR B:200 , GLU B:259 , ILE B:263 , HOH B:2185 , HOH B:2249
BINDING SITE FOR RESIDUE EDO B 911
11
CC1
SOFTWARE
ASN B:38 , PRO B:217 , ASP B:240 , HOH B:2027 , HOH B:2222 , HOH B:2250
BINDING SITE FOR RESIDUE EDO B 912
12
CC3
SOFTWARE
GLN D:113 , SER D:204 , LYS D:205 , THR D:206 , HOH D:2198 , HOH D:2249
BINDING SITE FOR RESIDUE EDO D 911
13
CC4
SOFTWARE
GLU D:195 , THR D:255 , HOH D:2196
BINDING SITE FOR RESIDUE EDO D 912
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BETA_LACTAMASE_D (B:65-75,D:65-75)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_LACTAMASE_D
PS00337
Beta-lactamase class-D active site.
BLO10_PSEAI
65-75
2
-
B:65-75
-
D:65-75
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1e4da_ (A:)
1b: SCOP_d1e4db_ (B:)
1c: SCOP_d1e4dc_ (C:)
1d: SCOP_d1e4dd_ (D:)
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Protein Domains
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)
(
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Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
Class D beta-lactamase
(32)
Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
(25)
1a
d1e4da_
A:
1b
d1e4db_
B:
1c
d1e4dc_
C:
1d
d1e4dd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1e4dC00 (C:21-266)
1b: CATH_1e4dD00 (D:21-266)
1c: CATH_1e4dB00 (B:21-264)
1d: CATH_1e4dA00 (A:22-264)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Pseudomonas aeruginosa. Organism_taxid: 287.
(17)
1a
1e4dC00
C:21-266
1b
1e4dD00
D:21-266
1c
1e4dB00
B:21-264
1d
1e4dA00
A:22-264
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain B
Chain D
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (352 KB)
Header - Asym.Unit
Biol.Unit 1 (175 KB)
Header - Biol.Unit 1
Biol.Unit 2 (177 KB)
Header - Biol.Unit 2
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