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1E42
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (48 KB)
Biol.Unit 2 (49 KB)
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(1)
Title
:
BETA2-ADAPTIN APPENDAGE DOMAIN, FROM CLATHRIN ADAPTOR AP2
Authors
:
D. J. Owen, P. R. Evans, H. T. Mcmahon
Date
:
27 Jun 00 (Deposition) - 21 Aug 00 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Endocytosis, Adaptor
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. J. Owen, Y. Vallis, B. M. F. Pearse, H. T. Mcmahon, P. R. Evans
The Structure And Function Of The Beta2-Adaptin Appendage Domain
Embo J. V. 19 4216 2000
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: DITHIANE DIOL (DTDa)
2b: DITHIANE DIOL (DTDb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
5a: NICKEL (II) ION (NIa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
DTD
2
Ligand/Ion
DITHIANE DIOL
3
GOL
2
Ligand/Ion
GLYCEROL
4
MG
4
Ligand/Ion
MAGNESIUM ION
5
NI
1
Ligand/Ion
NICKEL (II) ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:754 , ILE A:755 , PRO A:769 , LEU A:770 , HOH A:2060
BINDING SITE FOR RESIDUE CL A 971
02
AC2
SOFTWARE
PRO A:793 , VAL A:794 , GLN B:756
BINDING SITE FOR RESIDUE CL A 972
03
AC3
SOFTWARE
ALA B:754 , ILE B:755 , PRO B:769 , LEU B:770
BINDING SITE FOR RESIDUE CL B 971
04
AC4
SOFTWARE
GLN A:756 , PRO B:793 , VAL B:794
BINDING SITE FOR RESIDUE CL B 972
05
AC5
SOFTWARE
ASN A:872 , HOH A:2198 , HOH A:2332 , HOH A:2337 , HOH A:2338 , HOH A:2340
BINDING SITE FOR RESIDUE MG A 960
06
AC6
SOFTWARE
ASN B:872 , HOH B:2225 , HOH B:2351 , HOH B:2357 , HOH B:2358 , HOH B:2361
BINDING SITE FOR RESIDUE MG B 960
07
AC7
SOFTWARE
GLU B:849 , HOH B:2253 , HOH B:2330 , HOH B:2331 , HOH B:2332 , HOH B:2389
BINDING SITE FOR RESIDUE MG B 961
08
AC8
SOFTWARE
LYS B:842 , HOH B:2199 , HOH B:2315 , HOH B:2316 , HOH B:2317 , HOH B:2325
BINDING SITE FOR RESIDUE MG B 962
09
AC9
SOFTWARE
HOH A:2096 , HOH A:2097 , HOH A:2148 , HIS B:735 , HOH B:2043 , HOH B:2049
BINDING SITE FOR RESIDUE NI B 970
10
BC1
SOFTWARE
ALA A:746 , LEU A:747 , GLN A:748 , ARG A:834 , ARG A:879 , TYR A:888 , HOH A:2067 , HOH A:2402
BINDING SITE FOR RESIDUE DTD A 950
11
BC2
SOFTWARE
ALA B:746 , LEU B:747 , GLN B:748 , ARG B:834 , ALA B:877 , ARG B:879 , TYR B:888 , HOH B:2092 , HOH B:2419
BINDING SITE FOR RESIDUE DTD B 950
12
BC3
SOFTWARE
SER A:761 , PHE A:762 , ASN A:895 , ILE A:897 , GLU A:922 , VAL A:923 , HOH A:2119
BINDING SITE FOR RESIDUE GOL A 980
13
BC4
SOFTWARE
SER B:761 , ASN B:895 , ILE B:897 , GLU B:922 , VAL B:923
BINDING SITE FOR RESIDUE GOL B 980
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1e42a1 (A:705-824)
1b: SCOP_d1e42b1 (B:705-824)
2a: SCOP_d1e42a2 (A:825-937)
2b: SCOP_d1e42b2 (B:825-937)
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Clathrin adaptor appendage domain
(28)
Family
:
Alpha-adaptin ear subdomain-like
(14)
Protein domain
:
Beta2-adaptin AP2 ear domain, N-terminal subdomain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1e42a1
A:705-824
1b
d1e42b1
B:705-824
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Subdomain of clathrin and coatomer appendage domain
(16)
Superfamily
:
Subdomain of clathrin and coatomer appendage domain
(16)
Family
:
Clathrin adaptor appendage, alpha and beta chain-specific domain
(14)
Protein domain
:
Beta2-adaptin AP2, C-terminal subdomain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d1e42a2
A:825-937
2b
d1e42b2
B:825-937
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1e42A02 (A:822-937)
1b: CATH_1e42B02 (B:822-937)
2a: CATH_1e42A01 (A:705-821)
2b: CATH_1e42B01 (B:705-821)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
TATA-Binding Protein
(118)
Homologous Superfamily
:
TATA-Binding Protein
(37)
Human (Homo sapiens)
(4)
1a
1e42A02
A:822-937
1b
1e42B02
B:822-937
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1150, no name defined]
(6)
Human (Homo sapiens)
(4)
2a
1e42A01
A:705-821
2b
1e42B01
B:705-821
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (101 KB)
Header - Asym.Unit
Biol.Unit 1 (48 KB)
Header - Biol.Unit 1
Biol.Unit 2 (49 KB)
Header - Biol.Unit 2
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