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1E3W
Asym. Unit
Info
Asym.Unit (353 KB)
Biol.Unit 1 (345 KB)
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(1)
Title
:
RAT BRAIN 3-HYDROXYACYL-COA DEHYDROGENASE BINARY COMPLEX WITH NADH AND 3-KETO BUTYRATE
Authors
:
A. J. Powell, J. A. Read, R. L. Brady
Date
:
26 Jun 00 (Deposition) - 25 May 01 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Dehydrogenase, Beta-Oxidation Of Fatty Acids, Steroids, Amyloid Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Powell, J. A. Read, M. J. Banfield, F. Gunn-Moore, S. D. Yan, J. Lustbader, A. R. Stern, D. M. Stern, R. L. Brady
Recognition Of Structurally Diverse Substrates By Type Ii 3-Hydroxyacyl-Coa Dehydrogenase (Hadh Ii) Amyloid-Beta Binding Alcohol Dehydrogenase (Abad)
J. Mol. Biol. V. 303 311 2000
[
close entry info
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: ACETOACETIC ACID (AAEa)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
4b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
4c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AAE
1
Ligand/Ion
ACETOACETIC ACID
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
SO4
5
Ligand/Ion
SULFATE ION
4
TRS
3
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER C:67 , GLU C:68 , LYS C:69 , TRS C:303 , HOH C:540 , HOH C:440 , HOH C:451 , HOH C:532
BINDING SITE FOR RESIDUE SO4 L 2
02
AC2
SOFTWARE
SER D:67 , GLU D:68 , LYS D:69
BINDING SITE FOR RESIDUE SO4 L 3
03
AC3
SOFTWARE
SER A:67 , GLU A:68 , LYS A:69 , HOH A:408
BINDING SITE FOR RESIDUE SO4 L 7
04
AC4
SOFTWARE
SER B:67 , GLU B:68 , LYS B:69 , HOH B:406 , HOH B:486
BINDING SITE FOR RESIDUE SO4 L 8
05
AC5
SOFTWARE
LYS A:99 , HIS A:102 , LYS A:104 , ASN A:139 , GLU A:140 , PRO A:141 , ARG A:147 , HOH A:420
BINDING SITE FOR RESIDUE SO4 L 9
06
AC6
SOFTWARE
GLY A:17 , SER A:20 , GLY A:21 , LEU A:22 , ASP A:41 , VAL A:42 , ALA A:63 , ASN A:64 , VAL A:65 , CYS A:91 , ALA A:92 , GLY A:93 , VAL A:120 , THR A:153 , ALA A:154 , TYR A:168 , LYS A:172 , PRO A:198 , GLY A:199 , LEU A:200 , PHE A:201 , THR A:203 , PRO A:204 , LEU A:205 , LEU A:206 , HOH A:424 , HOH A:423 , HOH A:438 , HOH A:509 , HOH A:445 , HOH A:462 , HOH A:455
BINDING SITE FOR RESIDUE NAD A 301
07
AC7
SOFTWARE
GLY B:17 , SER B:20 , GLY B:21 , LEU B:22 , ASP B:41 , VAL B:42 , ALA B:63 , ASN B:64 , VAL B:65 , CYS B:91 , ALA B:92 , GLY B:93 , VAL B:120 , THR B:153 , ALA B:154 , TYR B:168 , LYS B:172 , PRO B:198 , GLY B:199 , LEU B:200 , PHE B:201 , THR B:203 , PRO B:204 , LEU B:205 , HOH B:531 , HOH B:449 , HOH B:455 , HOH B:514 , HOH B:466 , HOH B:516 , HOH B:470 , HOH B:439
BINDING SITE FOR RESIDUE NAD B 301
08
AC8
SOFTWARE
GLY C:17 , SER C:20 , GLY C:21 , LEU C:22 , ASP C:41 , VAL C:42 , ALA C:63 , ASN C:64 , VAL C:65 , CYS C:91 , ALA C:92 , GLY C:93 , VAL C:120 , THR C:153 , ALA C:154 , TYR C:168 , LYS C:172 , PRO C:198 , GLY C:199 , LEU C:200 , PHE C:201 , THR C:203 , PRO C:204 , LEU C:205 , HOH C:443 , HOH C:456 , HOH C:473 , HOH C:509 , HOH C:536 , HOH C:429 , HOH C:483 , HOH C:412
BINDING SITE FOR RESIDUE NAD C 301
09
AC9
SOFTWARE
GLY D:17 , SER D:20 , GLY D:21 , LEU D:22 , ASP D:41 , VAL D:42 , ALA D:63 , ASN D:64 , VAL D:65 , CYS D:91 , ALA D:92 , GLY D:93 , VAL D:120 , THR D:153 , ALA D:154 , TYR D:168 , LYS D:172 , PRO D:198 , GLY D:199 , LEU D:200 , PHE D:201 , THR D:203 , PRO D:204 , LEU D:205 , HOH D:2109 , HOH D:2040 , HOH D:2023 , HOH D:2090 , HOH D:2085 , HOH D:2071 , HOH D:2008 , AAE D:302
BINDING SITE FOR RESIDUE NAD D 301
10
BC1
SOFTWARE
TYR D:168 , THR D:208 , NAD D:301 , HOH D:2003 , HOH D:2039
BINDING SITE FOR RESIDUE AAE L 1
11
BC2
SOFTWARE
GLU B:249 , VAL B:250 , PHE D:159 , GLU D:249 , VAL D:250 , ARG D:252 , HOH B:423 , HOH B:402 , HOH B:545
BINDING SITE FOR RESIDUE TRS L 4
12
BC3
SOFTWARE
GLU A:249 , VAL A:250 , PHE C:159 , GLU C:249 , VAL C:250 , ARG C:252 , HOH A:463 , HOH A:403 , HOH A:417 , HOH A:532
BINDING SITE FOR RESIDUE TRS L 5
13
BC4
SOFTWARE
GLU B:46 , GLU C:68 , LYS C:69 , HOH D:2105 , SO4 C:302 , HOH C:451 , HOH C:481 , HOH C:532 , HOH C:439 , HOH C:444
BINDING SITE FOR RESIDUE TRS L 6
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:155-183,B:155-183,C:155-183,D:15...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
HCD2_RAT
155-183
4
A:155-183
B:155-183
C:155-183
D:155-183
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1e3wa_ (A:)
1b: SCOP_d1e3wc_ (C:)
1c: SCOP_d1e3wd_ (D:)
1d: SCOP_d1e3wb_ (B:)
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(
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Type II 3-hydroxyacyl-CoA dehydrogenase
(6)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
1a
d1e3wa_
A:
1b
d1e3wc_
C:
1c
d1e3wd_
D:
1d
d1e3wb_
B:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1e3wB00 (B:7-261)
1b: CATH_1e3wC00 (C:7-261)
1c: CATH_1e3wD00 (D:7-261)
1d: CATH_1e3wA00 (A:7-261)
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Norway rat (Rattus norvegicus)
(18)
1a
1e3wB00
B:7-261
1b
1e3wC00
C:7-261
1c
1e3wD00
D:7-261
1d
1e3wA00
A:7-261
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
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Chain C
Chain D
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (353 KB)
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