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1E33
Biol. Unit 1
Info
Asym.Unit (84 KB)
Biol.Unit 1 (152 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ARYLSULFATASE A MUTANT P426L
Authors
:
R. Von Buelow, B. Schmidt, T. Dierks, K. Von Figura, I. Uson
Date
:
06 Jun 00 (Deposition) - 25 May 01 (Release) - 16 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : P
Biol. Unit 1: P (2x)
Keywords
:
Hydrolase, Cerebroside-3-Sulfate Hydrolysis, Lysosomal Enzyme, Formylglycine
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Von Bulow, B. Schmidt, T. Dierks, N. Schwabauer, K. Schilling, E. Weber, I. Uson, K. Von Figura
Defective Oligomerization Of Arylsulfatase A As A Cause Of Its Instability In Lysosomes And Metachromatic Leukodystrophy.
J. Biol. Chem. V. 277 9455 2002
[
close entry info
]
Hetero Components
(2, 6)
Info
All Hetero Components
1a: 3,3-DIHYDROXY L-ALANINE (DDZa)
2a: MAGNESIUM ION (MGa)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
3b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DDZ
2
Mod. Amino Acid
3,3-DIHYDROXY L-ALANINE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
NDG
4
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS P:142 , ARG P:143 , ASN P:184 , PHE P:204 , NDG P:602
BINDING SITE FOR RESIDUE NDG P 601
2
AC2
SOFTWARE
LEU P:117 , ARG P:143 , ASP P:211 , NDG P:601
BINDING SITE FOR RESIDUE NDG P 602
3
AC3
SOFTWARE
ASP P:29 , ASP P:30 , DDZ P:69 , ASP P:281 , ASN P:282
BINDING SITE FOR RESIDUE MG P 603
[
close Site info
]
SAPs(SNPs)/Variants
(104, 208)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
001: VAR_054165 (D29N, chain P, )
002: VAR_054166 (D30H, chain P, )
003: VAR_054167 (G32S, chain P, )
004: VAR_067414 (L52P, chain P, )
005: VAR_054168 (L68P, chain P, )
006: VAR_007243 (L76P, chain P, )
007: VAR_007244 (P82L, chain P, )
008: VAR_007245 (R84Q, chain P, )
009: VAR_054169 (R84W, chain P, )
010: VAR_007246 (G86D, chain P, )
011: VAR_054170 (P94A, chain P, )
012: VAR_007247 (S95N, chain P, )
013: VAR_007248 (S96F, chain P, )
014: VAR_007249 (S96L, chain P, )
015: VAR_007250 (G99D, chain P, )
016: VAR_054171 (G99V, chain P, )
017: VAR_007251 (G119R, chain P, )
018: VAR_007252 (G122S, chain P, )
019: VAR_007253 (L135P, chain P, )
020: VAR_007254 (P136L, chain P, )
021: VAR_054172 (P136S, chain P, )
022: VAR_067415 (H138D, chain P, )
023: VAR_054174 (R143G, chain P, )
024: VAR_054175 (P148L, chain P, )
025: VAR_007255 (D152Y, chain P, )
026: VAR_054176 (Q153H, chain P, )
027: VAR_007256 (G154D, chain P, )
028: VAR_054177 (P155L, chain P, )
029: VAR_007257 (P155R, chain P, )
030: VAR_054178 (C156R, chain P, )
031: VAR_007258 (P167R, chain P, )
032: VAR_007259 (D169N, chain P, )
033: VAR_007260 (C172Y, chain P, )
034: VAR_007261 (I179S, chain P, )
035: VAR_054179 (L181Q, chain P, )
036: VAR_054180 (Q190H, chain P, )
037: VAR_054181 (P191T, chain P, )
038: VAR_007262 (W193C, chain P, )
039: VAR_007263 (Y201C, chain P, )
040: VAR_054182 (A212P, chain P, )
041: VAR_007264 (A212V, chain P, )
042: VAR_054183 (R217H, chain P, )
043: VAR_054184 (F219V, chain P, )
044: VAR_007265 (A224V, chain P, )
045: VAR_054185 (H227Y, chain P, )
046: VAR_007266 (P231T, chain P, )
047: VAR_007267 (R244C, chain P, )
048: VAR_007268 (R244H, chain P, )
049: VAR_007269 (G245R, chain P, )
050: VAR_054186 (F247S, chain P, )
051: VAR_007270 (S250Y, chain P, )
052: VAR_054187 (E253K, chain P, )
053: VAR_054188 (D255H, chain P, )
054: VAR_007271 (T274M, chain P, )
055: VAR_054189 (D281Y, chain P, )
056: VAR_054190 (N282S, chain P, )
057: VAR_054191 (T286P, chain P, )
058: VAR_007272 (R288C, chain P, )
059: VAR_054192 (R288H, chain P, )
060: VAR_054193 (G293D, chain P, )
061: VAR_054194 (G293S, chain P, )
062: VAR_054195 (C294Y, chain P, )
063: VAR_007273 (S295Y, chain P, )
064: VAR_054196 (L298S, chain P, )
065: VAR_008132 (C300F, chain P, )
066: VAR_054197 (K302N, chain P, )
067: VAR_067416 (T304M, chain P, )
068: VAR_054198 (Y306H, chain P, )
069: VAR_067417 (E307K, chain P, )
070: VAR_054199 (G308D, chain P, )
071: VAR_054200 (G308V, chain P, )
072: VAR_007274 (G309S, chain P, )
073: VAR_007275 (R311Q, chain P, )
074: VAR_054201 (E312D, chain P, )
075: VAR_007276 (A314T, chain P, )
076: VAR_054202 (G325S, chain P, )
077: VAR_054203 (T327I, chain P, )
078: VAR_007277 (D335V, chain P, )
079: VAR_007278 (N350S, chain P, )
080: VAR_018838 (F356V, chain P, )
081: VAR_007279 (K367N, chain P, )
082: VAR_007280 (R370Q, chain P, )
083: VAR_007281 (R370W, chain P, )
084: VAR_054204 (Y376N, chain P, )
085: VAR_007282 (P377L, chain P, )
086: VAR_054205 (D381E, chain P, )
087: VAR_007283 (E382K, chain P, )
088: VAR_007284 (R384C, chain P, )
089: VAR_007285 (R390Q, chain P, )
090: VAR_007286 (R390W, chain P, )
091: VAR_007287 (T391S, chain P, )
092: VAR_007288 (H397Y, chain P, )
093: VAR_067418 (S406G, chain P, )
094: VAR_054206 (T408I, chain P, )
095: VAR_054207 (T409I, chain P, )
096: VAR_008133 (P425T, chain P, )
097: VAR_007291 (L426L, chain P, )
098: VAR_054208 (L428P, chain P, )
099: VAR_054209 (Y429S, chain P, )
100: VAR_018839 (N440S, chain P, )
101: VAR_007292 (A464V, chain P, )
102: VAR_054210 (A469G, chain P, )
103: VAR_054211 (C489G, chain P, )
104: VAR_007293 (R496H, chain P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
001
UniProt
VAR_054165
D
29
N
ARSA_HUMAN
Disease (MLD)
199476346
P
D
29
N
002
UniProt
VAR_054166
D
30
H
ARSA_HUMAN
Disease (MLD)
199476340
P
D
30
H
003
UniProt
VAR_054167
G
32
S
ARSA_HUMAN
Disease (MLD)
199476350
P
G
32
S
004
UniProt
VAR_067414
L
52
P
ARSA_HUMAN
Disease (MLD)
199476357
P
L
52
P
005
UniProt
VAR_054168
L
68
P
ARSA_HUMAN
Disease (MLD)
199476351
P
L
68
P
006
UniProt
VAR_007243
L
76
P
ARSA_HUMAN
Polymorphism
199476362
P
L
76
P
007
UniProt
VAR_007244
P
82
L
ARSA_HUMAN
Disease (MLD)
6151411
P
P
82
L
008
UniProt
VAR_007245
R
84
Q
ARSA_HUMAN
Disease (MLD)
74315458
P
R
84
Q
009
UniProt
VAR_054169
R
84
W
ARSA_HUMAN
Disease (MLD)
199476352
P
R
84
W
010
UniProt
VAR_007246
G
86
D
ARSA_HUMAN
Disease (MLD)
74315460
P
G
86
D
011
UniProt
VAR_054170
P
94
A
ARSA_HUMAN
Disease (MLD)
199476353
P
P
94
A
012
UniProt
VAR_007247
S
95
N
ARSA_HUMAN
Disease (MLD)
199476363
P
S
95
N
013
UniProt
VAR_007248
S
96
F
ARSA_HUMAN
Disease (MLD)
74315456
P
S
96
F
014
UniProt
VAR_007249
S
96
L
ARSA_HUMAN
Disease (MLD)
199476371
P
S
96
L
015
UniProt
VAR_007250
G
99
D
ARSA_HUMAN
Disease (MLD)
74315455
P
G
99
D
016
UniProt
VAR_054171
G
99
V
ARSA_HUMAN
Disease (MLD)
74315455
P
G
99
V
017
UniProt
VAR_007251
G
119
R
ARSA_HUMAN
Disease (MLD)
199476364
P
G
119
R
018
UniProt
VAR_007252
G
122
S
ARSA_HUMAN
Disease (MLD)
74315461
P
G
122
S
019
UniProt
VAR_007253
L
135
P
ARSA_HUMAN
Disease (MLD)
121434215
P
L
135
P
020
UniProt
VAR_007254
P
136
L
ARSA_HUMAN
Disease (MLD)
74315462
P
P
136
L
021
UniProt
VAR_054172
P
136
S
ARSA_HUMAN
Disease (MLD)
60504011
P
P
136
S
022
UniProt
VAR_067415
H
138
D
ARSA_HUMAN
Disease (MLD)
199476358
P
H
138
D
023
UniProt
VAR_054174
R
143
G
ARSA_HUMAN
Disease (MLD)
199476373
P
R
143
G
024
UniProt
VAR_054175
P
148
L
ARSA_HUMAN
Disease (MLD)
199476375
P
P
148
L
025
UniProt
VAR_007255
D
152
Y
ARSA_HUMAN
Disease (MLD)
199476365
P
D
152
Y
026
UniProt
VAR_054176
Q
153
H
ARSA_HUMAN
Disease (MLD)
199476377
P
Q
153
H
027
UniProt
VAR_007256
G
154
D
ARSA_HUMAN
Disease (MLD)
74315463
P
G
154
D
028
UniProt
VAR_054177
P
155
L
ARSA_HUMAN
Disease (MLD)
74315464
P
P
155
L
029
UniProt
VAR_007257
P
155
R
ARSA_HUMAN
Disease (MLD)
74315464
P
P
155
R
030
UniProt
VAR_054178
C
156
R
ARSA_HUMAN
Disease (MLD)
199476348
P
C
156
R
031
UniProt
VAR_007258
P
167
R
ARSA_HUMAN
Disease (MLD)
74315465
P
P
167
R
032
UniProt
VAR_007259
D
169
N
ARSA_HUMAN
Disease (MLD)
74315466
P
D
169
N
033
UniProt
VAR_007260
C
172
Y
ARSA_HUMAN
Disease (MLD)
199476381
P
C
172
Y
034
UniProt
VAR_007261
I
179
S
ARSA_HUMAN
Disease (MLD)
74315457
P
I
179
S
035
UniProt
VAR_054179
L
181
Q
ARSA_HUMAN
Disease (MLD)
199476378
P
L
181
Q
036
UniProt
VAR_054180
Q
190
H
ARSA_HUMAN
Disease (MLD)
199476372
P
Q
190
H
037
UniProt
VAR_054181
P
191
T
ARSA_HUMAN
Disease (MLD)
199476374
P
P
191
T
038
UniProt
VAR_007262
W
193
C
ARSA_HUMAN
Polymorphism
6151415
P
W
193
C
039
UniProt
VAR_007263
Y
201
C
ARSA_HUMAN
Disease (MLD)
199476345
P
Y
201
C
040
UniProt
VAR_054182
A
212
P
ARSA_HUMAN
Disease (MLD)
199476341
P
A
212
P
041
UniProt
VAR_007264
A
212
V
ARSA_HUMAN
Disease (MLD)
74315467
P
A
212
V
042
UniProt
VAR_054183
R
217
H
ARSA_HUMAN
Disease (MLD)
148403406
P
R
217
H
043
UniProt
VAR_054184
F
219
V
ARSA_HUMAN
Disease (MLD)
199476383
P
F
219
V
044
UniProt
VAR_007265
A
224
V
ARSA_HUMAN
Disease (MLD)
74315468
P
A
224
V
045
UniProt
VAR_054185
H
227
Y
ARSA_HUMAN
Disease (MLD)
199476354
P
H
227
Y
046
UniProt
VAR_007266
P
231
T
ARSA_HUMAN
Disease (MLD)
74315469
P
P
231
T
047
UniProt
VAR_007267
R
244
C
ARSA_HUMAN
Disease (MLD)
74315470
P
R
244
C
048
UniProt
VAR_007268
R
244
H
ARSA_HUMAN
Disease (MLD)
199476366
P
R
244
H
049
UniProt
VAR_007269
G
245
R
ARSA_HUMAN
Disease (MLD)
74315471
P
G
245
R
050
UniProt
VAR_054186
F
247
S
ARSA_HUMAN
Disease (MLD)
199476384
P
F
247
S
051
UniProt
VAR_007270
S
250
Y
ARSA_HUMAN
Disease (MLD)
199476367
P
S
250
Y
052
UniProt
VAR_054187
E
253
K
ARSA_HUMAN
Disease (MLD)
74315483
P
E
253
K
053
UniProt
VAR_054188
D
255
H
ARSA_HUMAN
Disease (MLD)
80338819
P
D
255
H
054
UniProt
VAR_007271
T
274
M
ARSA_HUMAN
Disease (MLD)
74315472
P
T
274
M
055
UniProt
VAR_054189
D
281
Y
ARSA_HUMAN
Disease (MLD)
199476386
P
D
281
Y
056
UniProt
VAR_054190
N
282
S
ARSA_HUMAN
Disease (MLD)
199476342
P
N
282
S
057
UniProt
VAR_054191
T
286
P
ARSA_HUMAN
Disease (MLD)
28940894
P
T
286
P
058
UniProt
VAR_007272
R
288
C
ARSA_HUMAN
Disease (MLD)
74315473
P
R
288
C
059
UniProt
VAR_054192
R
288
H
ARSA_HUMAN
Disease (MLD)
199476355
P
R
288
H
060
UniProt
VAR_054193
G
293
D
ARSA_HUMAN
Disease (MLD)
199476387
P
G
293
D
061
UniProt
VAR_054194
G
293
S
ARSA_HUMAN
Disease (MLD)
199476349
P
G
293
S
062
UniProt
VAR_054195
C
294
Y
ARSA_HUMAN
Disease (MLD)
199476347
P
C
294
Y
063
UniProt
VAR_007273
S
295
Y
ARSA_HUMAN
Disease (MLD)
74315474
P
S
295
Y
064
UniProt
VAR_054196
L
298
S
ARSA_HUMAN
Disease (MLD)
199476389
P
L
298
S
065
UniProt
VAR_008132
C
300
F
ARSA_HUMAN
Disease (MLD)
74315484
P
C
300
F
066
UniProt
VAR_054197
K
302
N
ARSA_HUMAN
Disease (MLD)
199476343
P
K
302
N
067
UniProt
VAR_067416
T
304
M
ARSA_HUMAN
Disease (MLD)
199476359
P
T
304
M
068
UniProt
VAR_054198
Y
306
H
ARSA_HUMAN
Disease (MLD)
199476379
P
Y
306
H
069
UniProt
VAR_067417
E
307
K
ARSA_HUMAN
Disease (MLD)
199476360
P
E
307
K
070
UniProt
VAR_054199
G
308
D
ARSA_HUMAN
Disease (MLD)
199476356
P
G
308
D
071
UniProt
VAR_054200
G
308
V
ARSA_HUMAN
Disease (MLD)
199476356
P
G
308
V
072
UniProt
VAR_007274
G
309
S
ARSA_HUMAN
Disease (MLD)
74315459
P
G
309
S
073
UniProt
VAR_007275
R
311
Q
ARSA_HUMAN
Disease (MLD)
199476382
P
R
311
Q
074
UniProt
VAR_054201
E
312
D
ARSA_HUMAN
Disease (MLD)
199476390
P
E
312
D
075
UniProt
VAR_007276
A
314
T
ARSA_HUMAN
Disease (MLD)
199476368
P
A
314
T
076
UniProt
VAR_054202
G
325
S
ARSA_HUMAN
Disease (MLD)
148092995
P
G
325
S
077
UniProt
VAR_054203
T
327
I
ARSA_HUMAN
Disease (MLD)
---
P
T
327
I
078
UniProt
VAR_007277
D
335
V
ARSA_HUMAN
Disease (MLD)
74315475
P
D
335
V
079
UniProt
VAR_007278
N
350
S
ARSA_HUMAN
Polymorphism
2071421
P
N
350
S
080
UniProt
VAR_018838
F
356
V
ARSA_HUMAN
Polymorphism
6151422
P
F
356
V
081
UniProt
VAR_007279
K
367
N
ARSA_HUMAN
Disease (MLD)
199476369
P
K
367
N
082
UniProt
VAR_007280
R
370
Q
ARSA_HUMAN
Disease (MLD)
74315477
P
R
370
Q
083
UniProt
VAR_007281
R
370
W
ARSA_HUMAN
Disease (MLD)
74315476
P
R
370
W
084
UniProt
VAR_054204
Y
376
N
ARSA_HUMAN
Disease (MLD)
199476344
P
Y
376
N
085
UniProt
VAR_007282
P
377
L
ARSA_HUMAN
Disease (MLD)
74315478
P
P
377
L
086
UniProt
VAR_054205
D
381
E
ARSA_HUMAN
Disease (MLD)
6151425
P
D
381
E
087
UniProt
VAR_007283
E
382
K
ARSA_HUMAN
Disease (MLD)
74315479
P
E
382
K
088
UniProt
VAR_007284
R
384
C
ARSA_HUMAN
Disease (MLD)
199476370
P
R
384
C
089
UniProt
VAR_007285
R
390
Q
ARSA_HUMAN
Disease (MLD)
199476391
P
R
390
Q
090
UniProt
VAR_007286
R
390
W
ARSA_HUMAN
Disease (MLD)
74315480
P
R
390
W
091
UniProt
VAR_007287
T
391
S
ARSA_HUMAN
Polymorphism
743616
P
T
391
S
092
UniProt
VAR_007288
H
397
Y
ARSA_HUMAN
Disease (MLD)
199476376
P
H
397
Y
093
UniProt
VAR_067418
S
406
G
ARSA_HUMAN
Disease (MLD)
199476361
P
S
406
G
094
UniProt
VAR_054206
T
408
I
ARSA_HUMAN
Disease (MLD)
28940895
P
T
408
I
095
UniProt
VAR_054207
T
409
I
ARSA_HUMAN
Disease (MLD)
74315481
P
T
409
I
096
UniProt
VAR_008133
P
425
T
ARSA_HUMAN
Disease (MLD)
74315485
P
P
425
T
097
UniProt
VAR_007291
P
426
L
ARSA_HUMAN
Disease (MLD)
28940893
P
L
426
L
098
UniProt
VAR_054208
L
428
P
ARSA_HUMAN
Disease (MLD)
199476392
P
L
428
P
099
UniProt
VAR_054209
Y
429
S
ARSA_HUMAN
Disease (MLD)
199476380
P
Y
429
S
100
UniProt
VAR_018839
N
440
S
ARSA_HUMAN
Polymorphism
6151427
P
N
440
S
101
UniProt
VAR_007292
A
464
V
ARSA_HUMAN
Polymorphism
---
P
A
464
V
102
UniProt
VAR_054210
A
469
G
ARSA_HUMAN
Disease (MLD)
199476385
P
A
469
G
103
UniProt
VAR_054211
C
489
G
ARSA_HUMAN
Disease (MLD)
199476388
P
C
489
G
104
UniProt
VAR_007293
R
496
H
ARSA_HUMAN
Polymorphism
6151428
P
R
496
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
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1: SULFATASE_1 (P:67-79)
2: SULFATASE_2 (P:115-125)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SULFATASE_1
PS00523
Sulfatases signature 1.
ARSA_HUMAN
67-79
2
P:67-79
2
SULFATASE_2
PS00149
Sulfatases signature 2.
ARSA_HUMAN
115-125
2
P:115-125
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SCOP Domains
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1a: SCOP_d1e33p_ (P:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Alkaline phosphatase-like
(78)
Superfamily
:
Alkaline phosphatase-like
(78)
Family
:
Arylsulfatase
(10)
Protein domain
:
Arylsulfatase A
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1e33p_
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CATH Domains
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1a: CATH_1e33P02 (P:371-471)
2a: CATH_1e33P01 (P:19-370,P:472-503)
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Alpha Beta
(26913)
Architecture
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2-Layer Sandwich
(8480)
Topology
:
Arylsulfatase, C-terminal domain
(26)
Homologous Superfamily
:
[code=3.30.1120.10, no name defined]
(11)
Human (Homo sapiens)
(9)
1a
1e33P02
P:371-471
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Alkaline Phosphatase, subunit A
(66)
Homologous Superfamily
:
Alkaline Phosphatase, subunit A
(66)
Human (Homo sapiens)
(14)
2a
1e33P01
P:19-370,P:472-503
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