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1E28
Asym. Unit
Info
Asym.Unit (66 KB)
Biol.Unit 1 (64 KB)
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(1)
Title
:
NONSTANDARD PEPTIDE BINDING OF HLA-B*5101 COMPLEXED WITH HIV IMMUNODOMINANT EPITOPE KM2(TAFTIPSI)
Authors
:
K. Maenaka, T. Maenaka, H. Tomiyama, M. Takiguchi, D. I. Stuart, E. Y. Jones
Date
:
18 May 00 (Deposition) - 12 Sep 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Hla B51, Hiv, Mhc Class I, Histocompatibility Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Maenaka, T. Maenaka, H. Tomiyama, M. Takiguchi, D. I. Stuart, E. Y. Jones
Nonstandard Peptide Binding Revealed By Crystal Structures Of Hla-B5101 Complexed With Hiv Immunodominant Epitopes
J. Immunol. V. 165 3260 2000
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_017442 (S131R, chain A, )
2: VAR_016479 (E152V, chain A, )
3: VAR_016480 (L156D, chain A, )
4: VAR_016481 (W167G, chain A, )
5: VAR_016482 (H171Y, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_017442
S
155
R
1B51_HUMAN
Polymorphism
---
A
S
131
R
2
UniProt
VAR_016479
E
176
V
1B51_HUMAN
Polymorphism
---
A
E
152
V
3
UniProt
VAR_016480
L
180
D
1B51_HUMAN
Polymorphism
---
A
L
156
D
4
UniProt
VAR_016481
W
191
G
1B51_HUMAN
Polymorphism
---
A
W
167
G
5
UniProt
VAR_016482
H
195
Y
1B51_HUMAN
Polymorphism
---
A
H
171
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,B:78-84,B:78-84,A:257-263)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_GORGO
98-104
1
B:78-84
B2MG_HUMAN
98-104
1
B:78-84
B2MG_PANTR
98-104
1
B:78-84
1B51_HUMAN
281-287
1
A:257-263
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Exons
(8, 8)
Info
All Exons
Exon 1.1a (B:1-3)
Exon 1.2a (B:3-96)
Exon 1.4 (B:96-99)
Exon 2.1b (A:1-1)
Exon 2.1g (A:1-91)
Exon 2.1k (A:91-183)
Exon 2.2e (A:183-275)
Exon 2.3c (A:275-276)
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2a
03: Boundary 1.2a/1.4
04: Boundary 1.4/1.5
05: Boundary -/2.1b
06: Boundary 2.1b/2.1g
07: Boundary 2.1g/2.1k
08: Boundary 2.1k/2.2e
09: Boundary 2.2e/2.3c
10: Boundary 2.3c/2.4d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSPTRT00000012956
1a
ENSPTRE00000370636
chr15:
41860468-41860604
137
B2MG_PANTR
1-23
23
1
B:1-3
3
1.2a
ENSPTRT00000012956
2a
ENSPTRE00000238527
chr15:
41864413-41864691
279
B2MG_PANTR
23-116
94
1
B:3-96
94
1.4
ENSPTRT00000012956
4
ENSPTRE00000238528
chr15:
41865318-41865345
28
B2MG_PANTR
116-119
4
1
B:96-99
4
1.5
ENSPTRT00000012956
5
ENSPTRE00000070423
chr15:
41866598-41867140
543
B2MG_PANTR
-
0
0
-
-
2.1b
ENST00000359635
1b
ENSE00001927439
HSCHR6_MHC_QBL:31315097-31314982
116
1B51_HUMAN
1-25
25
1
A:1-1
1
2.1g
ENST00000359635
1g
ENSE00001696140
HSCHR6_MHC_QBL:31314853-31314584
270
1B51_HUMAN
25-115
91
1
A:1-91
91
2.1k
ENST00000359635
1k
ENSE00001735604
HSCHR6_MHC_QBL:31314337-31314062
276
1B51_HUMAN
115-207
93
1
A:91-183
93
2.2e
ENST00000359635
2e
ENSE00001758727
HSCHR6_MHC_QBL:31313489-31313214
276
1B51_HUMAN
207-299
93
1
A:183-275
93
2.3c
ENST00000359635
3c
ENSE00001709629
HSCHR6_MHC_QBL:31313109-31312993
117
1B51_HUMAN
299-338
40
1
A:275-276
2
2.4d
ENST00000359635
4d
ENSE00001622787
HSCHR6_MHC_QBL:31312551-31312519
33
1B51_HUMAN
338-349
12
0
-
-
2.4e
ENST00000359635
4e
ENSE00001685892
HSCHR6_MHC_QBL:31312412-31312365
48
1B51_HUMAN
349-362
14
0
-
-
2.5b
ENST00000359635
5b
ENSE00001661687
HSCHR6_MHC_QBL:31312192-31311768
425
1B51_HUMAN
-
0
0
-
-
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1e28b_ (B:)
2a: SCOP_d1e28a1 (A:182-276)
3a: SCOP_d1e28a2 (A:1-181)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1e28b_
B:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Human (Homo sapiens) [TaxId: 9606]
(187)
2a
d1e28a1
A:182-276
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Human (Homo sapiens), HLA-B51 [TaxId: 9606]
(2)
3a
d1e28a2
A:1-181
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1e28A01 (A:1-181)
2a: CATH_1e28B00 (B:1-99)
2b: CATH_1e28A02 (A:182-272)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1e28A01
A:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1e28B00
B:1-99
2b
1e28A02
A:182-272
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Pfam Domains
(0, 0)
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all PFAM domains
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