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1E1O
Asym. Unit
Info
Asym.Unit (92 KB)
Biol.Unit 1 (171 KB)
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(1)
Title
:
LYSYL-TRNA SYNTHETASE (LYSU) HEXAGONAL FORM, COMPLEXED WITH LYSINE
Authors
:
G. Desogus, F. Todone, P. Brick, S. Onesti
Date
:
09 May 00 (Deposition) - 28 Jul 00 (Release) - 29 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.12
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Ligase, Aminoacyl-Trna Synthetase, Protein Biosynthesis
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
G. Desogus, F. Todone, P. Brick, S. Onesti
Active Site Of Lysyl-Trna Synthetase: Structural Studies Of The Adenylation Reaction
Biochemistry V. 39 8418 2000
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
2a: LYSINE (LYSa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
8
Ligand/Ion
GLYCEROL
2
LYS
1
Mod. Amino Acid
LYSINE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:216 , GLU A:240 , ARG A:262 , GLU A:278 , TYR A:280 , ASN A:424 , PHE A:426 , GLU A:428 , GLY A:473 , GLY A:475 , HOH A:2205 , HOH A:2353
BINDING SITE FOR RESIDUE LYS A 510
2
AC2
SOFTWARE
ARG A:194 , GLU A:204 , GLU A:206 , ILE A:257 , ASN A:258 , HOH A:2199
BINDING SITE FOR RESIDUE GOL A 520
3
AC3
SOFTWARE
TYR A:286 , THR A:390 , GLU A:391 , ASN A:403 , THR A:410 , ASP A:411 , ARG A:412
BINDING SITE FOR RESIDUE GOL A 521
4
AC4
SOFTWARE
HIS A:382
BINDING SITE FOR RESIDUE GOL A 522
5
AC5
SOFTWARE
SER A:218 , VAL A:396 , ARG A:412 , ASN A:424 , PHE A:426 , MET A:454 , HOH A:2182 , HOH A:2354 , HOH A:2355
BINDING SITE FOR RESIDUE GOL A 523
6
AC6
SOFTWARE
HIS A:315 , GLN A:385 , HOH A:2356
BINDING SITE FOR RESIDUE GOL A 524
7
AC7
SOFTWARE
HIS A:270 , ASN A:271 , PHE A:274 , ILE A:491 , HOH A:2357
BINDING SITE FOR RESIDUE GOL A 525
8
AC8
SOFTWARE
PRO A:214 , GLY A:215 , ALA A:217 , SER A:218 , ALA A:219 , PRO A:221 , ILE A:237 , ASP A:451 , GLU A:452 , ALA A:453 , MET A:454 , PHE A:455
BINDING SITE FOR RESIDUE GOL A 526
9
AC9
SOFTWARE
VAL A:33 , LYS A:333 , ASP A:404 , HOH A:2288 , HOH A:2360
BINDING SITE FOR RESIDUE GOL A 527
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1e1oa1 (A:11-153)
2a: SCOP_d1e1oa2 (A:161-502)
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Protein Domains
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(
)
Organisms
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)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Anticodon-binding domain
(21)
Protein domain
:
Lysyl-tRNA synthetase (LysRS)
(10)
Escherichia coli, gene lysU [TaxId: 562]
(5)
1a
d1e1oa1
A:11-153
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
(103)
Protein domain
:
Lysyl-tRNA synthetase (LysRS)
(8)
Escherichia coli, gene lysU [TaxId: 562]
(5)
2a
d1e1oa2
A:161-502
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1e1oA02 (A:161-500)
2a: CATH_1e1oA01 (A:14-153)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
BirA Bifunctional Protein; domain 2
(111)
Homologous Superfamily
:
Bira Bifunctional Protein; Domain 2
(111)
Escherichia coli. Organism_taxid: 83333. Strain: k12.
(4)
1a
1e1oA02
A:161-500
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Escherichia coli. Organism_taxid: 83333. Strain: k12.
(4)
2a
1e1oA01
A:14-153
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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