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1E14
Asym. Unit
Info
Asym.Unit (161 KB)
Biol.Unit 1 (149 KB)
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(1)
Title
:
PHOTOSYNTHETIC REACTION CENTER MUTANT WITH PHE M197 REPLACED WITH ARG (CHAIN M, FM197R) AND GLY M203 REPLACED WITH ASP (CHAIN M, GM203D)
Authors
:
P. K. Fyfe, J. P. Ridge, K. E. Mcauley, R. J. Cogdell, N. W. Isaacs, M. R. Jo
Date
:
18 Apr 00 (Deposition) - 02 Jun 00 (Release) - 21 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : H,L,M
Biol. Unit 1: H,L,M (1x)
Keywords
:
Transmembrane, Electron Transport, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. K. Fyfe, J. P. Ridge, K. E. Mcauley, R. J. Cogdell, N. W. Isaacs, M. R. Jones
Structural Consequences Of The Replacement Of Glycine M203 With Aspartic Acid In The Reaction Center From Rhodobacter Sphaeroides.
Biochemistry V. 39 5953 2000
(for further references see the
PDB file header
)
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Hetero Components
(7, 14)
Info
All Hetero Components
1a: BACTERIOCHLOROPHYLL A (BCLa)
1b: BACTERIOCHLOROPHYLL A (BCLb)
1c: BACTERIOCHLOROPHYLL A (BCLc)
1d: BACTERIOCHLOROPHYLL A (BCLd)
2a: BACTERIOPHEOPHYTIN A (BPHa)
2b: BACTERIOPHEOPHYTIN A (BPHb)
3a: CARDIOLIPIN (CDLa)
4a: FE (III) ION (FEa)
5a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
5b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
5c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
6a: SPEROIDENONE (SPNa)
7a: UBIQUINONE-10 (U10a)
7b: UBIQUINONE-10 (U10b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCL
4
Ligand/Ion
BACTERIOCHLOROPHYLL A
2
BPH
2
Ligand/Ion
BACTERIOPHEOPHYTIN A
3
CDL
1
Ligand/Ion
CARDIOLIPIN
4
FE
1
Ligand/Ion
FE (III) ION
5
LDA
3
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
6
SPN
1
Ligand/Ion
SPEROIDENONE
7
U10
2
Ligand/Ion
UBIQUINONE-10
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE L:97 , ALA L:124 , ILE L:125 , ALA L:127 , LEU L:131 , VAL L:157 , ASN L:166 , HIS L:168 , HIS L:173 , ALA L:176 , ILE L:177 , PHE L:180 , SER L:244 , CYS L:247 , MET L:248 , BPH L:401 , BCL L:1304 , TYR M:210 , BCL M:1301 , BCL M:1303
BINDING SITE FOR RESIDUE BCL L1302
02
AC2
SOFTWARE
TYR L:128 , ILE L:150 , TRP L:151 , HIS L:153 , LEU L:154 , BPH L:401 , BCL L:1302 , ARG M:197 , ASP M:203 , ILE M:206 , ALA M:207 , TYR M:210 , LEU M:214 , LDA M:703 , BCL M:1303
BINDING SITE FOR RESIDUE BCL L1304
03
AC3
SOFTWARE
HIS L:168 , MET L:174 , ILE L:177 , SER L:178 , THR L:182 , BCL L:1302 , HOH L:2023 , MET M:122 , HIS M:182 , LEU M:183 , THR M:186 , BPH M:402 , SPN M:600 , BCL M:1303
BINDING SITE FOR RESIDUE HIS M1301
04
AC4
SOFTWARE
VAL L:157 , PHE L:181 , BCL L:1302 , BCL L:1304 , LEU M:156 , ASN M:187 , PHE M:189 , SER M:190 , LEU M:196 , ARG M:197 , HIS M:202 , SER M:205 , ILE M:206 , LEU M:209 , TYR M:210 , VAL M:276 , GLY M:280 , ILE M:284 , BPH M:402 , BCL M:1301
BINDING SITE FOR RESIDUE MET M1303
05
AC5
SOFTWARE
ALA L:96 , PHE L:97 , TRP L:100 , GLU L:104 , PHE L:121 , ILE L:150 , HIS L:153 , SER L:237 , LEU L:238 , VAL L:241 , BCL L:1302 , BCL L:1304 , TYR M:210 , ALA M:213 , LEU M:214 , TRP M:252 , MET M:256
BINDING SITE FOR RESIDUE BPH L 401
06
AC6
SOFTWARE
PHE L:181 , ALA L:184 , LEU L:185 , LEU L:189 , LEU L:219 , SER M:59 , GLY M:63 , TRP M:66 , ALA M:125 , TRP M:129 , THR M:133 , PHE M:150 , ALA M:153 , ALA M:273 , THR M:277 , BCL M:1301 , BCL M:1303
BINDING SITE FOR RESIDUE BPH M 402
07
AC7
SOFTWARE
HIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266
BINDING SITE FOR RESIDUE FE M 500
08
AC8
SOFTWARE
THR L:182 , LEU L:189 , HIS L:190 , LEU L:193 , GLU L:212 , ASP L:213 , PHE L:216 , TYR L:222 , SER L:223 , ILE L:224 , GLY L:225 , THR L:226 , ILE L:229 , LEU L:232
BINDING SITE FOR RESIDUE U10 L 501
09
AC9
SOFTWARE
PHE L:29 , THR L:38 , ARG L:103 , HIS M:219 , THR M:222 , ALA M:248 , ALA M:249 , TRP M:252 , MET M:256 , PHE M:258 , ASN M:259 , ALA M:260 , THR M:261 , ILE M:265 , TRP M:268
BINDING SITE FOR RESIDUE U10 M 502
10
BC1
SOFTWARE
PHE M:67 , PHE M:68 , ILE M:70 , GLY M:71 , TRP M:75 , PHE M:85 , TRP M:115 , SER M:119 , PHE M:120 , MET M:122 , TRP M:157 , PHE M:162 , TRP M:171 , GLY M:178 , HIS M:182 , BCL M:1301
BINDING SITE FOR RESIDUE SPN M 600
11
BC2
SOFTWARE
MET H:36 , TYR H:40 , GLN H:53 , PHE H:56 , PHE M:258 , LDA M:703
BINDING SITE FOR RESIDUE LDA H 701
12
BC3
SOFTWARE
VAL L:220 , GLY L:221 , SER M:30 , GLY M:31 , GLY M:33 , GLY M:48
BINDING SITE FOR RESIDUE LDA M 702
13
BC4
SOFTWARE
TRP H:21 , LDA H:701 , TRP L:151 , BCL L:1304 , PRO M:200 , ASP M:203
BINDING SITE FOR RESIDUE LDA M 703
14
BC5
SOFTWARE
ILE H:22 , PHE H:23 , GLY H:26 , LEU H:27 , TYR H:30 , HOH H:2002 , ASN L:199 , PRO L:200 , GLY M:143 , LYS M:144 , HIS M:145 , TRP M:148 , TRP M:155 , ARG M:267 , ILE M:270 , TRP M:271 , HOH M:2042
BINDING SITE FOR RESIDUE CDL M 800
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: REACTION_CENTER (L:166-192,L:166-192,M:195-221,M:19...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REACTION_CENTER
PS00244
Photosynthetic reaction center proteins signature.
RCEL_RHOS4
167-193
1
L:166-192
RCEL_RHOSH
167-193
1
L:166-192
RCEM_RHOS4
196-222
1
M:195-221
RCEM_RHOSH
196-222
1
M:195-221
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1e14h1 (H:36-250)
2a: SCOP_d1e14l_ (L:)
3a: SCOP_d1e14m_ (M:)
4a: SCOP_d1e14h2 (H:11-35)
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(
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PRC-barrel domain
(113)
Superfamily
:
PRC-barrel domain
(113)
Family
:
Photosynthetic reaction centre, H-chain, cytoplasmic domain
(108)
Protein domain
:
Photosynthetic reaction centre
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
1a
d1e14h1
H:36-250
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Superfamily
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Family
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Protein domain
:
L (light) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
2a
d1e14l_
L:
Protein domain
:
M (medium) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
3a
d1e14m_
M:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Photosystem II reaction centre subunit H, transmembrane region
(108)
Family
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Protein domain
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
4a
d1e14h2
H:11-35
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1e14H02 (H:117-251)
2a: CATH_1e14H01 (H:11-116)
3a: CATH_1e14M01 (M:1-143)
3b: CATH_1e14M02 (M:144-303)
3c: CATH_1e14L01 (L:1-163)
3d: CATH_1e14L02 (L:164-263)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 2
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 2
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(12)
1a
1e14H02
H:117-251
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 1
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 1
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(12)
2a
1e14H01
H:11-116
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Photosynthetic Reaction Center, subunit M; domain 1
(93)
Homologous Superfamily
:
Membrane spanning alpha-helix pairs
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(12)
3a
1e14M01
M:1-143
3b
1e14M02
M:144-303
3c
1e14L01
L:1-163
3d
1e14L02
L:164-263
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain H
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Chain M
Asymmetric Unit 1
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