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1E07
Asym. Unit
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Asym.Unit (16 KB)
Biol.Unit 1 (14 KB)
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(1)
Title
:
MODEL OF HUMAN CARCINOEMBRYONIC ANTIGEN BY HOMOLOGY MODELLING AND CURVE-FITTING TO EXPERIMENTAL SOLUTION SCATTERING DATA
Authors
:
M. K. Boehm, S. J. Perkins
Date
:
11 Mar 00 (Deposition) - 04 Jul 00 (Release) - 28 Dec 11 (Revision)
Method
:
SOLUTION SCATTERING
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycoprotein, Cea, Tumour Marker, Immunoglobulin-Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. K. Boehm, S. J. Perkins
Structural Models For Carcinoembryonic Antigen And Its Complex With The Single-Chain Fv Antibody Molecule Mfe23.
Febs Lett. V. 475 11 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_061310 (I46V, chain A, )
2: VAR_061311 (V49A, chain A, )
3: VAR_056028 (Q103P, chain A, )
4: VAR_031091 (A306D, chain A, )
5: VAR_024493 (E364E, chain A, )
6: VAR_031092 (R630S, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_061310
I
80
V
CEAM5_HUMAN
Polymorphism
12971352
A
I
46
V
2
UniProt
VAR_061311
V
83
A
CEAM5_HUMAN
Polymorphism
28683503
A
V
49
A
3
UniProt
VAR_056028
Q
137
P
CEAM5_HUMAN
Polymorphism
3815780
A
Q
103
P
4
UniProt
VAR_031091
A
340
D
CEAM5_HUMAN
Polymorphism
10407503
A
A
306
D
5
UniProt
VAR_024493
K
398
E
CEAM5_HUMAN
Polymorphism
7249230
A
E
364
E
6
UniProt
VAR_031092
R
664
S
CEAM5_HUMAN
Polymorphism
10423171
A
R
630
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(8, 8)
Info
All Exons
Exon 1.2b (A:1-108)
Exon 1.3 (A:108-201)
Exon 1.4 (A:201-286)
Exon 1.5a (A:286-379)
Exon 1.6 (A:379-464)
Exon 1.7 (A:464-557)
Exon 1.8 (A:557-642)
Exon 1.9b (A:642-642)
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All Exon Boundaries
1: Boundary 1.1a/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5a
5: Boundary 1.5a/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9b
9: Boundary 1.9b/1.10a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000221992
1a
ENSE00001824227
chr19:
42212504-42212714
211
CEAM5_HUMAN
1-22
22
0
-
-
1.2b
ENST00000221992
2b
ENSE00001673438
chr19:
42213599-42213958
360
CEAM5_HUMAN
22-142
121
1
A:1-108
108
1.3
ENST00000221992
3
ENSE00001745070
chr19:
42218890-42219168
279
CEAM5_HUMAN
142-235
94
1
A:108-201
94
1.4
ENST00000221992
4
ENSE00001616278
chr19:
42219569-42219823
255
CEAM5_HUMAN
235-320
86
1
A:201-286
86
1.5a
ENST00000221992
5a
ENSE00001769209
chr19:
42221374-42221652
279
CEAM5_HUMAN
320-413
94
1
A:286-379
94
1.6
ENST00000221992
6
ENSE00001779224
chr19:
42222047-42222301
255
CEAM5_HUMAN
413-498
86
1
A:379-464
86
1.7
ENST00000221992
7
ENSE00001731243
chr19:
42223849-42224127
279
CEAM5_HUMAN
498-591
94
1
A:464-557
94
1.8
ENST00000221992
8
ENSE00000842483
chr19:
42224842-42225096
255
CEAM5_HUMAN
591-676
86
1
A:557-642
86
1.9b
ENST00000221992
9b
ENSE00001053043
chr19:
42231154-42231272
119
CEAM5_HUMAN
676-702
27
1
A:642-642
1
1.10a
ENST00000221992
10a
ENSE00001942723
chr19:
42233104-42233718
615
CEAM5_HUMAN
-
0
0
-
-
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (16 KB)
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Header - Biol.Unit 1
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