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1DZN
Biol. Unit 1
Info
Asym.Unit (184 KB)
Biol.Unit 1 (698 KB)
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(1)
Title
:
ASP170SER MUTANT OF VANILLYL-ALCOHOL OXIDASE
Authors
:
R. H. H. Van Den Heuvel, M. W. Fraaije, W. J. H. Van Berkel, A. Mattevi
Date
:
05 Mar 00 (Deposition) - 07 Mar 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (4x)
Keywords
:
Flavin-Dependent Oxidase Enzyme, Flavin-Dependent Oxidase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
R. H. H. Van Den Heuvel, M. W. Fraaije, A. Mattevi, W. J. H. Van Berkel
Asp170 Is Crucial For The Redox Properties Of Vanillyl-Alcohol Oxidase
J. Biol. Chem. V. 275 14799 2000
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: 2-METHOXY-4-VINYL-PHENOL (EUGa)
1b: 2-METHOXY-4-VINYL-PHENOL (EUGb)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EUG
8
Ligand/Ion
2-METHOXY-4-VINYL-PHENOL
2
FAD
8
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:99 , SER A:101 , ILE A:102 , GLY A:103 , ARG A:104 , ASN A:105 , GLY A:110 , PRO A:169 , SER A:170 , LEU A:171 , GLY A:174 , SER A:175 , LEU A:177 , GLY A:178 , ASN A:179 , VAL A:181 , GLY A:184 , VAL A:185 , TYR A:187 , GLY A:260 , ILE A:261 , VAL A:262 , TRP A:413 , HIS A:422 , PHE A:424 , ARG A:504 , LYS A:545 , EUG A:601 , HOH A:2009
BINDING SITE FOR RESIDUE FAD A 600
2
AC2
SOFTWARE
TRP B:98 , PRO B:99 , SER B:101 , ILE B:102 , GLY B:103 , ARG B:104 , ASN B:105 , GLY B:110 , SER B:170 , LEU B:171 , GLY B:174 , SER B:175 , LEU B:177 , ASN B:179 , GLU B:182 , GLY B:184 , VAL B:185 , TYR B:187 , GLY B:260 , VAL B:262 , TRP B:413 , ILE B:414 , HIS B:422 , PHE B:424 , ARG B:504 , LYS B:545 , EUG B:601
BINDING SITE FOR RESIDUE FAD B 600
3
AC3
SOFTWARE
TYR A:108 , SER A:170 , VAL A:185 , TYR A:187 , PHE A:424 , THR A:459 , ILE A:468 , TYR A:503 , ARG A:504 , FAD A:600
BINDING SITE FOR RESIDUE EUG A 601
4
AC4
SOFTWARE
TYR B:108 , SER B:170 , VAL B:185 , TYR B:187 , PHE B:424 , HIS B:466 , ILE B:468 , TYR B:503 , ARG B:504 , FAD B:600
BINDING SITE FOR RESIDUE EUG B 601
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: FAD_PCMH (A:67-272,B:67-272)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FAD_PCMH
PS51387
PCMH-type FAD-binding domain profile.
VAOX_PENSI
67-272
8
A:67-272
B:67-272
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1dzna2 (A:6-273)
1b: SCOP_d1dznb2 (B:6-273)
2a: SCOP_d1dzna1 (A:274-560)
2b: SCOP_d1dznb1 (B:274-560)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-binding/transporter-associated domain-like
(99)
Superfamily
:
FAD-binding/transporter-associated domain-like
(99)
Family
:
FAD-linked oxidases, N-terminal domain
(29)
Protein domain
:
Vanillyl-alcohol oxidase
(16)
Fungus (Penicillium simplicissimum) [TaxId: 69488]
(16)
1a
d1dzna2
A:6-273
1b
d1dznb2
B:6-273
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
FAD-linked oxidases, C-terminal domain
(42)
Family
:
Vanillyl-alcohol oxidase-like
(20)
Protein domain
:
Vanillyl-alcohol oxidase
(16)
Fungus (Penicillium simplicissimum) [TaxId: 69488]
(16)
2a
d1dzna1
A:274-560
2b
d1dznb1
B:274-560
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1dznA01 (A:6-128)
1b: CATH_1dznB01 (B:6-128)
2a: CATH_1dznA02 (A:129-151,A:165-215,A:235-271)
2b: CATH_1dznB02 (B:129-151,B:165-215,B:235-271)
3a: CATH_1dznA03 (A:276-506)
3b: CATH_1dznB03 (B:276-506)
4a: CATH_1dznA04 (A:507-559)
4b: CATH_1dznB04 (B:507-559)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2
(50)
Homologous Superfamily
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2
(50)
Penicillium simplicissimum. Organism_taxid: 69488.
(15)
1a
1dznA01
A:6-128
1b
1dznB01
B:6-128
Topology
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3
(63)
Homologous Superfamily
:
[code=3.30.465.10, no name defined]
(63)
Penicillium simplicissimum. Organism_taxid: 69488.
(15)
2a
1dznA02
A:129-151,A:165-215,A:235-271
2b
1dznB02
B:129-151,B:165-215,B:235-271
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Vanillyl-alcohol Oxidase; Chain A, domain 3
(23)
Homologous Superfamily
:
Vanillyl-alcohol Oxidase; Chain A, domain 3
(23)
Penicillium simplicissimum. Organism_taxid: 69488.
(15)
3a
1dznA03
A:276-506
3b
1dznB03
B:276-506
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Vanillyl-alcohol Oxidase; Chain A, domain 4
(22)
Homologous Superfamily
:
Vanillyl-alcohol Oxidase; Chain A, domain 4
(22)
Penicillium simplicissimum. Organism_taxid: 69488.
(15)
4a
1dznA04
A:507-559
4b
1dznB04
B:507-559
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Pfam Domains
(0, 0)
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select residue range 5 to 10 in all chains
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Asym.Unit (184 KB)
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