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Getting 'Biological Unit' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
1DZI
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (47 KB)
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(1)
Title
:
INTEGRIN ALPHA2 I DOMAIN / COLLAGEN COMPLEX
Authors
:
J. Emsley, G. Knight, R. Farndale, M. Barnes, R. Liddington
Date
:
01 Mar 00 (Deposition) - 01 Mar 01 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Integrin, Collagen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Emsley, G. Knight, R. Farndale, M. Barnes, R. Liddington
Structural Basis Of Collagen Recognition By Integrin Alpha2Beta1
Cell(Cambridge, Mass. ) V. 101 47 2000
[
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Hetero Components
(3, 22)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
2a: 4-HYDROXYPROLINE (HYPa)
2b: 4-HYDROXYPROLINE (HYPb)
2c: 4-HYDROXYPROLINE (HYPc)
2d: 4-HYDROXYPROLINE (HYPd)
2e: 4-HYDROXYPROLINE (HYPe)
2f: 4-HYDROXYPROLINE (HYPf)
2g: 4-HYDROXYPROLINE (HYPg)
2h: 4-HYDROXYPROLINE (HYPh)
2i: 4-HYDROXYPROLINE (HYPi)
2j: 4-HYDROXYPROLINE (HYPj)
2k: 4-HYDROXYPROLINE (HYPk)
2l: 4-HYDROXYPROLINE (HYPl)
2m: 4-HYDROXYPROLINE (HYPm)
2n: 4-HYDROXYPROLINE (HYPn)
2o: 4-HYDROXYPROLINE (HYPo)
2p: 4-HYDROXYPROLINE (HYPp)
2q: 4-HYDROXYPROLINE (HYPq)
2r: 4-HYDROXYPROLINE (HYPr)
3a: AMINO GROUP (NH2a)
3b: AMINO GROUP (NH2b)
3c: AMINO GROUP (NH2c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
1
Ligand/Ion
COBALT (II) ION
2
HYP
18
Mod. Amino Acid
4-HYDROXYPROLINE
3
NH2
3
Mod. Amino Acid
AMINO GROUP
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:153 , SER A:155 , THR A:221 , GLU C:11 , HOH A:2001 , HOH A:2007
BINDING SITE FOR RESIDUE CO F 400
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: VWFA (A:145-326)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VWFA
PS50234
VWFA domain profile.
ITA2_HUMAN
174-361
1
A:145-326
[
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Exons
(4, 4)
Info
All Exons
Exon 1.6 (A:142-181)
Exon 1.7 (A:182-231)
Exon 1.8 (A:231-281)
Exon 1.9 (A:282-326)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000296585
1a
ENSE00002047974
chr5:
52285156-52285362
207
ITA2_HUMAN
1-22
22
0
-
-
1.2
ENST00000296585
2
ENSE00001082059
chr5:
52322578-52322698
121
ITA2_HUMAN
22-62
41
0
-
-
1.3
ENST00000296585
3
ENSE00001082086
chr5:
52337942-52338051
110
ITA2_HUMAN
62-99
38
0
-
-
1.4
ENST00000296585
4
ENSE00001082085
chr5:
52340831-52340922
92
ITA2_HUMAN
99-129
31
0
-
-
1.5
ENST00000296585
5
ENSE00001082071
chr5:
52344193-52344307
115
ITA2_HUMAN
130-168
39
0
-
-
1.6
ENST00000296585
6
ENSE00001082076
chr5:
52344473-52344600
128
ITA2_HUMAN
168-210
43
1
A:142-181
40
1.7
ENST00000296585
7
ENSE00001082063
chr5:
52347241-52347389
149
ITA2_HUMAN
211-260
50
1
A:182-231
50
1.8
ENST00000296585
8
ENSE00001082075
chr5:
52351368-52351518
151
ITA2_HUMAN
260-310
51
1
A:231-281
51
1.9
ENST00000296585
9
ENSE00001082081
chr5:
52351814-52351979
166
ITA2_HUMAN
311-366
56
1
A:282-326
45
1.10
ENST00000296585
10
ENSE00001082065
chr5:
52353855-52353931
77
ITA2_HUMAN
366-391
26
0
-
-
1.11
ENST00000296585
11
ENSE00001082067
chr5:
52355704-52355842
139
ITA2_HUMAN
392-438
47
0
-
-
1.12
ENST00000296585
12
ENSE00001082084
chr5:
52356731-52356876
146
ITA2_HUMAN
438-486
49
0
-
-
1.13
ENST00000296585
13
ENSE00001082064
chr5:
52358616-52358759
144
ITA2_HUMAN
487-534
48
0
-
-
1.14
ENST00000296585
14
ENSE00001082077
chr5:
52360742-52360945
204
ITA2_HUMAN
535-602
68
0
-
-
1.15b
ENST00000296585
15b
ENSE00001082062
chr5:
52361671-52361807
137
ITA2_HUMAN
603-648
46
0
-
-
1.16
ENST00000296585
16
ENSE00001082058
chr5:
52362948-52363087
140
ITA2_HUMAN
648-695
48
0
-
-
1.17
ENST00000296585
17
ENSE00001082055
chr5:
52365939-52366090
152
ITA2_HUMAN
695-745
51
0
-
-
1.18
ENST00000296585
18
ENSE00001082082
chr5:
52367768-52367878
111
ITA2_HUMAN
746-782
37
0
-
-
1.19
ENST00000296585
19
ENSE00001082060
chr5:
52368443-52368525
83
ITA2_HUMAN
783-810
28
0
-
-
1.20
ENST00000296585
20
ENSE00001082054
chr5:
52368948-52369089
142
ITA2_HUMAN
810-857
48
0
-
-
1.21
ENST00000296585
21
ENSE00001082080
chr5:
52370215-52370307
93
ITA2_HUMAN
858-888
31
0
-
-
1.22
ENST00000296585
22
ENSE00001082083
chr5:
52370891-52370967
77
ITA2_HUMAN
889-914
26
0
-
-
1.23
ENST00000296585
23
ENSE00001082056
chr5:
52371051-52371134
84
ITA2_HUMAN
914-942
29
0
-
-
1.24
ENST00000296585
24
ENSE00001082070
chr5:
52374602-52374704
103
ITA2_HUMAN
942-976
35
0
-
-
1.25
ENST00000296585
25
ENSE00001082068
chr5:
52376341-52376451
111
ITA2_HUMAN
977-1013
37
0
-
-
1.26
ENST00000296585
26
ENSE00001082079
chr5:
52377422-52377526
105
ITA2_HUMAN
1014-1048
35
0
-
-
1.27
ENST00000296585
27
ENSE00001082061
chr5:
52379170-52379283
114
ITA2_HUMAN
1049-1086
38
0
-
-
1.28
ENST00000296585
28
ENSE00001082057
chr5:
52382782-52382871
90
ITA2_HUMAN
1087-1116
30
0
-
-
1.29
ENST00000296585
29
ENSE00001082066
chr5:
52385776-52385892
117
ITA2_HUMAN
1117-1155
39
0
-
-
1.30e
ENST00000296585
30e
ENSE00001262757
chr5:
52386349-52390609
4261
ITA2_HUMAN
1156-1181
26
0
-
-
[
close EXON info
]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1dzia_ (A:)
2a: SCOP_d1dzib_ (B:)
2b: SCOP_d1dzic_ (C:)
2c: SCOP_d1dzid_ (D:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
vWA-like
(111)
Superfamily
:
vWA-like
(111)
Family
:
Integrin A (or I) domain
(84)
Protein domain
:
Integrin alpha2-beta1
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1dzia_
A:
Class
:
Designed proteins
(167)
Fold
:
Collagen-like peptides
(15)
Superfamily
:
Collagen-like peptides
(15)
Family
:
Collagen-like peptides
(15)
Protein domain
:
Collagen-like peptides
(15)
Synthetic (contains integrin-binding sequence)
(2)
2a
d1dzib_
B:
2b
d1dzic_
C:
2c
d1dzid_
D:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1dziA00 (A:142-326)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.410, no name defined]
(87)
Homo sapiens. Organism_taxid: 9606.
(3)
1a
1dziA00
A:142-326
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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)
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Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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