PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1DYN
Asym. Unit
Info
Asym.Unit (45 KB)
Biol.Unit 1 (323 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE AT 2.2 ANGSTROMS RESOLUTION OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM HUMAN DYNAMIN
Authors
:
K. M. Ferguson, M. A. Lemmon, J. Schlessinger, P. B. Sigler
Date
:
21 Dec 94 (Deposition) - 27 Feb 95 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (8x)
Keywords
:
Signal Transduction Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. M. Ferguson, M. A. Lemmon, J. Schlessinger, P. B. Sigler
Crystal Structure At 2. 2 A Resolution Of The Pleckstrin Homology Domain From Human Dynamin.
Cell(Cambridge, Mass. ) V. 79 199 1994
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PH_DOMAIN (A:11-117,B:11-117)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PH_DOMAIN
PS50003
PH domain profile.
DYN1_HUMAN
519-625
2
A:11-117
B:11-117
[
close PROSITE info
]
Exons
(4, 8)
Info
All Exons
Exon 1.16 (A:10-11 | B:10-11)
Exon 1.18b (A:12-49 | B:12-49)
Exon 1.19b (A:50-86 | B:50-86)
Exon 1.21b (A:86-122 | B:86-122)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.15a/1.16
2: Boundary 1.16/1.18b
3: Boundary 1.18b/1.19b
4: Boundary 1.19b/1.21b
5: Boundary 1.21b/1.22a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000372923
1a
ENSE00001918226
chr9:
130965658-130965910
253
DYN1_HUMAN
1-54
54
0
-
-
1.2a
ENST00000372923
2a
ENSE00001674469
chr9:
130980510-130980583
74
DYN1_HUMAN
54-79
26
0
-
-
1.3
ENST00000372923
3
ENSE00001611689
chr9:
130980861-130981010
150
DYN1_HUMAN
79-129
51
0
-
-
1.4
ENST00000372923
4
ENSE00001625483
chr9:
130981328-130981531
204
DYN1_HUMAN
129-197
69
0
-
-
1.5
ENST00000372923
5
ENSE00001739703
chr9:
130982267-130982365
99
DYN1_HUMAN
197-230
34
0
-
-
1.6
ENST00000372923
6
ENSE00001665870
chr9:
130982460-130982620
161
DYN1_HUMAN
230-283
54
0
-
-
1.7
ENST00000372923
7
ENSE00001617368
chr9:
130984476-130984618
143
DYN1_HUMAN
284-331
48
0
-
-
1.8a
ENST00000372923
8a
ENSE00001622069
chr9:
130984740-130984875
136
DYN1_HUMAN
331-376
46
0
-
-
1.9a
ENST00000372923
9a
ENSE00001756702
chr9:
130985072-130985139
68
DYN1_HUMAN
377-399
23
0
-
-
1.10
ENST00000372923
10
ENSE00001586124
chr9:
130986530-130986668
139
DYN1_HUMAN
399-445
47
0
-
-
1.13b
ENST00000372923
13b
ENSE00001582932
chr9:
130996300-130996386
87
DYN1_HUMAN
446-474
29
0
-
-
1.14
ENST00000372923
14
ENSE00001585744
chr9:
131001724-131001794
71
DYN1_HUMAN
475-498
24
0
-
-
1.15a
ENST00000372923
15a
ENSE00001582834
chr9:
131002007-131002058
52
DYN1_HUMAN
498-515
18
0
-
-
1.16
ENST00000372923
16
ENSE00001746307
chr9:
131002264-131002275
12
DYN1_HUMAN
516-519
4
2
A:10-11
B:10-11
2
2
1.18b
ENST00000372923
18b
ENSE00001708770
chr9:
131004511-131004624
114
DYN1_HUMAN
520-557
38
2
A:12-49
B:12-49
38
38
1.19b
ENST00000372923
19b
ENSE00001677536
chr9:
131008673-131008782
110
DYN1_HUMAN
558-594
37
2
A:50-86
B:50-86
37
37
1.21b
ENST00000372923
21b
ENSE00002194146
chr9:
131009654-131009765
112
DYN1_HUMAN
594-631
38
2
A:86-122
B:86-122
37
37
1.22a
ENST00000372923
22a
ENSE00001686999
chr9:
131010203-131010214
12
DYN1_HUMAN
632-635
4
0
-
-
1.22c
ENST00000372923
22c
ENSE00001607425
chr9:
131010862-131011032
171
DYN1_HUMAN
636-692
57
0
-
-
1.23
ENST00000372923
23
ENSE00001686168
chr9:
131012394-131012635
242
DYN1_HUMAN
693-773
81
0
-
-
1.24a
ENST00000372923
24a
ENSE00001728908
chr9:
131013004-131013219
216
DYN1_HUMAN
773-845
73
0
-
-
1.27c
ENST00000372923
27c
ENSE00001676343
chr9:
131016933-131017527
595
DYN1_HUMAN
845-864
20
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1dyna_ (A:)
1b: SCOP_d1dynb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Dynamin
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1dyna_
A:
1b
d1dynb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1dynA00 (A:10-122)
1b: CATH_1dynB00 (B:10-122)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
Human (Homo sapiens)
(85)
1a
1dynA00
A:10-122
1b
1dynB00
B:10-122
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (45 KB)
Header - Asym.Unit
Biol.Unit 1 (323 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1DYN
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help