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1DW9
Biol. Unit 1
Info
Asym.Unit (294 KB)
Biol.Unit 1 (285 KB)
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(1)
Title
:
STRUCTURE OF CYANASE REVEALS THAT A NOVEL DIMERIC AND DECAMERIC ARRANGEMENT OF SUBUNITS IS REQUIRED FOR FORMATION OF THE ENZYME ACTIVE SITE
Authors
:
M. A. Walsh, Z. Otwinowski, A. Perrakis, P. M. Anderson, A. Joachimiak, Center For Structural Genomics (Mcsg)
Date
:
03 Dec 99 (Deposition) - 16 May 00 (Release) - 28 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Lyase, Cyanate Degradation, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Walsh, Z. Otwinowski, A. Perrakis, P. M. Anderson, A. Joachimiak
Structure Of Cyanase Reveals That A Novel Dimeric And Decameric Arrangement Of Subunits Is Required For Formation Of The Enzyme Active Site
Structure V. 8 505 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 63)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
MSE
40
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
23
Ligand/Ion
SULFATE ION
[
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Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER C:122 , ALA C:123 , HOH C:2160 , ARG H:96 , ARG J:96
BINDING SITE FOR RESIDUE CL C1157
02
AC2
SOFTWARE
ARG C:96 , ARG E:96 , ILE H:120 , SER H:122 , ALA H:123 , HOH H:2137
BINDING SITE FOR RESIDUE CL H1157
03
AC3
SOFTWARE
ARG A:96 , ILE D:120 , SER D:122 , ALA D:123 , ARG F:96
BINDING SITE FOR RESIDUE CL D1157
04
AC4
SOFTWARE
ARG D:96 , ARG I:96 , ILE J:120 , SER J:122 , ALA J:123 , HOH J:2151
BINDING SITE FOR RESIDUE CL J1157
05
AC5
SOFTWARE
ARG A:96 , ILE B:120 , SER B:122 , ALA B:123 , ARG F:96
BINDING SITE FOR RESIDUE CL B1157
06
AC6
SOFTWARE
ARG H:96 , SER I:122 , ALA I:123 , ARG J:96
BINDING SITE FOR RESIDUE CL I1157
07
AC7
SOFTWARE
ARG C:96 , ARG E:96 , ILE G:120 , SER G:122 , ALA G:123
BINDING SITE FOR RESIDUE CL G1157
08
AC8
SOFTWARE
ILE A:120 , SER A:122 , ALA A:123 , HOH A:2147 , ARG D:96 , ARG I:96
BINDING SITE FOR RESIDUE CL A1157
09
AC9
SOFTWARE
ARG B:96 , ILE E:120 , SER E:122 , ALA E:123 , HOH E:2137 , ARG G:96
BINDING SITE FOR RESIDUE CL E1157
10
BC1
SOFTWARE
ARG B:96 , ILE F:120 , SER F:122 , ALA F:123 , HOH F:2126 , ARG G:96
BINDING SITE FOR RESIDUE CL F1157
11
BC2
SOFTWARE
ALA A:39 , GLU A:40 , HOH A:2159 , HOH A:3002 , HOH A:3004 , HOH A:3005
BINDING SITE FOR RESIDUE SO4 A1158
12
BC3
SOFTWARE
ALA B:39 , GLU B:40 , HOH B:3006
BINDING SITE FOR RESIDUE SO4 B1158
13
BC4
SOFTWARE
ALA C:39 , GLU C:40 , HOH C:3007 , HOH C:3008 , HOH C:3009
BINDING SITE FOR RESIDUE SO4 C1158
14
BC5
SOFTWARE
ALA D:39 , GLU D:40 , HOH D:3010
BINDING SITE FOR RESIDUE SO4 D1158
15
BC6
SOFTWARE
ALA E:39 , GLU E:40 , HOH E:2063 , HOH F:3012 , HOH G:3011
BINDING SITE FOR RESIDUE SO4 E1158
16
BC7
SOFTWARE
ALA F:39 , GLU F:40 , HOH F:2056 , HOH F:3013 , HOH F:3014
BINDING SITE FOR RESIDUE SO4 F1158
17
BC8
SOFTWARE
HOH F:3015 , ALA G:39 , GLU G:40 , HOH G:2063 , HOH G:3016
BINDING SITE FOR RESIDUE SO4 G1158
18
BC9
SOFTWARE
ALA H:39 , GLU H:40 , HOH H:2064 , HOH H:3017
BINDING SITE FOR RESIDUE SO4 H1158
19
CC1
SOFTWARE
ALA I:39 , GLU I:40 , HOH I:3018 , HOH I:3019
BINDING SITE FOR RESIDUE SO4 I1158
20
CC2
SOFTWARE
ALA J:39 , GLU J:40 , HOH J:3020 , HOH J:3021 , HOH J:3022
BINDING SITE FOR RESIDUE SO4 J1158
21
CC3
SOFTWARE
ARG A:87 , ARG B:87 , SO4 B:1159 , ARG D:87 , ARG J:87 , SO4 J:1159
BINDING SITE FOR RESIDUE SO4 D1159
22
CC4
SOFTWARE
ARG A:87 , ARG C:87 , SO4 D:1159 , SO4 H:1159 , ARG I:87 , ARG J:87
BINDING SITE FOR RESIDUE SO4 J1159
23
CC5
SOFTWARE
ARG C:87 , SO4 E:1159 , ARG G:87 , ARG H:87 , ARG I:87 , SO4 J:1159
BINDING SITE FOR RESIDUE SO4 H1159
24
CC6
SOFTWARE
SO4 B:1159 , ARG E:87 , ARG F:87 , ARG G:87 , ARG H:87 , SO4 H:1159 , HOH E:3023
BINDING SITE FOR RESIDUE SO4 E1159
25
CC7
SOFTWARE
ARG B:87 , ARG D:87 , SO4 D:1159 , ARG E:87 , SO4 E:1159 , ARG F:87
BINDING SITE FOR RESIDUE SO4 B1159
26
CC8
SOFTWARE
ALA A:33 , ASP A:34 , GLY A:35 , THR A:36 , GLY A:37 , HOH A:3024 , HOH A:3025 , HOH A:3026 , HOH A:3027 , HOH A:3028 , HOH E:2150
BINDING SITE FOR RESIDUE SO4 A1159
27
CC9
SOFTWARE
ASP D:34 , GLY D:35 , THR D:36 , GLY D:37
BINDING SITE FOR RESIDUE SO4 D1160
28
DC1
SOFTWARE
ASP E:34 , GLY E:35 , GLY E:37 , HOH E:3029 , HOH E:3030
BINDING SITE FOR RESIDUE SO4 E1160
29
DC2
SOFTWARE
ALA F:33 , ASP F:34 , GLY F:35 , THR F:36 , GLY F:37 , HOH F:3031
BINDING SITE FOR RESIDUE SO4 F1159
30
DC3
SOFTWARE
LYS D:131 , HOH D:2157 , HOH D:2159 , HOH D:2160 , ALA G:33 , ASP G:34 , GLY G:35 , THR G:36 , GLY G:37 , HOH G:2056 , HOH G:3032
BINDING SITE FOR RESIDUE SO4 G1159
31
DC4
SOFTWARE
ALA H:33 , ASP H:34 , GLY H:35 , THR H:36 , GLY H:37
BINDING SITE FOR RESIDUE SO4 H1160
32
DC5
SOFTWARE
ALA I:33 , ASP I:34 , GLY I:35 , THR I:36 , GLY I:37 , HOH I:2067 , HOH I:2070
BINDING SITE FOR RESIDUE SO4 I1159
33
DC6
SOFTWARE
ALA J:33 , ASP J:34 , GLY J:35 , THR J:36 , GLY J:37 , HOH J:2068
BINDING SITE FOR RESIDUE SO4 J1160
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
Select:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 20)
Info
All SCOP Domains
1a: SCOP_d1dw9a1 (A:1-86)
1b: SCOP_d1dw9b1 (B:1-86)
1c: SCOP_d1dw9c1 (C:1-86)
1d: SCOP_d1dw9d1 (D:1-86)
1e: SCOP_d1dw9e1 (E:1-86)
1f: SCOP_d1dw9f1 (F:1-86)
1g: SCOP_d1dw9g1 (G:1-86)
1h: SCOP_d1dw9h1 (H:1-86)
1i: SCOP_d1dw9i1 (I:1-86)
1j: SCOP_d1dw9j1 (J:1-86)
2a: SCOP_d1dw9a2 (A:87-156)
2b: SCOP_d1dw9b2 (B:87-156)
2c: SCOP_d1dw9c2 (C:87-156)
2d: SCOP_d1dw9d2 (D:87-156)
2e: SCOP_d1dw9e2 (E:87-156)
2f: SCOP_d1dw9f2 (F:87-156)
2g: SCOP_d1dw9g2 (G:87-156)
2h: SCOP_d1dw9h2 (H:87-156)
2i: SCOP_d1dw9i2 (I:87-156)
2j: SCOP_d1dw9j2 (J:87-156)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
lambda repressor-like DNA-binding domains
(180)
Superfamily
:
lambda repressor-like DNA-binding domains
(180)
Family
:
Cyanase N-terminal domain
(8)
Protein domain
:
Cyanase N-terminal domain
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d1dw9a1
A:1-86
1b
d1dw9b1
B:1-86
1c
d1dw9c1
C:1-86
1d
d1dw9d1
D:1-86
1e
d1dw9e1
E:1-86
1f
d1dw9f1
F:1-86
1g
d1dw9g1
G:1-86
1h
d1dw9h1
H:1-86
1i
d1dw9i1
I:1-86
1j
d1dw9j1
J:1-86
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cyanase C-terminal domain
(8)
Superfamily
:
Cyanase C-terminal domain
(8)
Family
:
Cyanase C-terminal domain
(8)
Protein domain
:
Cyanase C-terminal domain
(2)
Escherichia coli [TaxId: 562]
(2)
2a
d1dw9a2
A:87-156
2b
d1dw9b2
B:87-156
2c
d1dw9c2
C:87-156
2d
d1dw9d2
D:87-156
2e
d1dw9e2
E:87-156
2f
d1dw9f2
F:87-156
2g
d1dw9g2
G:87-156
2h
d1dw9h2
H:87-156
2i
d1dw9i2
I:87-156
2j
d1dw9j2
J:87-156
[
close SCOP info
]
CATH Domains
(2, 20)
Info
all CATH domains
1a: CATH_1dw9A02 (A:89-156)
1b: CATH_1dw9B02 (B:89-153)
1c: CATH_1dw9C02 (C:89-153)
1d: CATH_1dw9D02 (D:89-153)
1e: CATH_1dw9E02 (E:89-153)
1f: CATH_1dw9F02 (F:89-153)
1g: CATH_1dw9G02 (G:89-153)
1h: CATH_1dw9H02 (H:89-153)
1i: CATH_1dw9I02 (I:89-153)
1j: CATH_1dw9J02 (J:89-153)
2a: CATH_1dw9A01 (A:2-88)
2b: CATH_1dw9B01 (B:2-88)
2c: CATH_1dw9C01 (C:2-88)
2d: CATH_1dw9D01 (D:2-88)
2e: CATH_1dw9E01 (E:2-88)
2f: CATH_1dw9F01 (F:2-88)
2g: CATH_1dw9G01 (G:2-88)
2h: CATH_1dw9H01 (H:2-88)
2i: CATH_1dw9I01 (I:2-88)
2j: CATH_1dw9J01 (J:2-88)
View:
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Topologies
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Cyanate Lyase; Chain: A, domain 2
(8)
Homologous Superfamily
:
[code=3.30.1160.10, no name defined]
(8)
Escherichia coli. Organism_taxid: 562.
(8)
1a
1dw9A02
A:89-156
1b
1dw9B02
B:89-153
1c
1dw9C02
C:89-153
1d
1dw9D02
D:89-153
1e
1dw9E02
E:89-153
1f
1dw9F02
F:89-153
1g
1dw9G02
G:89-153
1h
1dw9H02
H:89-153
1i
1dw9I02
I:89-153
1j
1dw9J02
J:89-153
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
434 Repressor (Amino-terminal Domain)
(116)
Homologous Superfamily
:
lambda repressor-like DNA-binding domains
(100)
Escherichia coli. Organism_taxid: 562.
(10)
2a
1dw9A01
A:2-88
2b
1dw9B01
B:2-88
2c
1dw9C01
C:2-88
2d
1dw9D01
D:2-88
2e
1dw9E01
E:2-88
2f
1dw9F01
F:2-88
2g
1dw9G01
G:2-88
2h
1dw9H01
H:2-88
2i
1dw9I01
I:2-88
2j
1dw9J01
J:2-88
[
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Pfam Domains
(0, 0)
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all PFAM domains
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