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1DW1
Asym. Unit
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Asym.Unit (64 KB)
Biol.Unit 1 (21 KB)
Biol.Unit 2 (21 KB)
Biol.Unit 3 (21 KB)
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(1)
Title
:
STRUCTURE OF THE CYANIDE COMPLEX OF SHP, AN OXYGEN BINDING CYTOCHROME C
Authors
:
D. Leys, K. Backers, T. E. Meyer, W. R. Hagen, M. A. Cusanovich, J. J. Van Beeumen
Date
:
24 Jan 00 (Deposition) - 28 Jun 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Cytochrome C, Cyanide Complex, Disulfide Bridge, Asparagine Ligation, Oxygen Storage/Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Leys, K. Backers, T. E. Meyer, W. R. Hagen, M. A. Cusanovich, J. J. Van Beeumen
Crystal Structures Of An Oxygen-Binding Cytochrome C From Rhodobacter Sphaeroides.
J. Biol. Chem. V. 275 16050 2000
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: CYANIDE ION (CYNa)
1b: CYANIDE ION (CYNb)
1c: CYANIDE ION (CYNc)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CYN
3
Ligand/Ion
CYANIDE ION
2
HEM
3
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:84 , ASN A:88 , HEM A:113
BINDING SITE FOR RESIDUE CYN A 114
2
AC2
SOFTWARE
TRP B:84 , ASN B:88 , HEM B:113
BINDING SITE FOR RESIDUE CYN B 114
3
AC3
SOFTWARE
TRP C:84 , LEU C:85 , ASN C:88 , HEM C:113
BINDING SITE FOR RESIDUE CYN C 114
4
AC4
SOFTWARE
CYS A:43 , CYS A:46 , HIS A:47 , LEU A:66 , ARG A:74 , PHE A:75 , ARG A:80 , VAL A:81 , TRP A:84 , ASN A:88 , VAL A:92 , CYN A:114 , HOH A:124 , HOH A:141 , HOH A:165 , HOH A:173 , HOH A:201
BINDING SITE FOR RESIDUE HEM A 113
5
AC5
SOFTWARE
CYS B:43 , CYS B:46 , HIS B:47 , ILE B:63 , ARG B:74 , PHE B:75 , ARG B:80 , VAL B:81 , TRP B:84 , ASN B:88 , VAL B:92 , CYN B:114 , HOH B:123 , HOH B:135 , HOH B:175
BINDING SITE FOR RESIDUE HEM B 113
6
AC6
SOFTWARE
CYS C:43 , CYS C:46 , HIS C:47 , ARG C:58 , ILE C:63 , ARG C:74 , PHE C:75 , ARG C:80 , VAL C:81 , TRP C:84 , ASN C:88 , VAL C:92 , CYN C:114 , HOH C:131 , HOH C:146 , HOH C:171
BINDING SITE FOR RESIDUE HEM C 113
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: CYTC (A:20-112,B:20-112,C:20-112)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
SHP_RHOS4
37-129
3
A:20-112
B:20-112
C:20-112
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1dw1a_ (A:)
1b: SCOP_d1dw1b_ (B:)
1c: SCOP_d1dw1c_ (C:)
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Protein Domains
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
monodomain cytochrome c
(197)
Protein domain
:
SHP, an oxygen binding cytochrome c
(4)
Rhodobacter sphaeroides [TaxId: 1063]
(4)
1a
d1dw1a_
A:
1b
d1dw1b_
B:
1c
d1dw1c_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1dw1A00 (A:1-112)
1b: CATH_1dw1B00 (B:1-112)
1c: CATH_1dw1C00 (C:1-112)
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Organisms
(
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)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Rhodobacter sphaeroides. Organism_taxid: 1063
(7)
1a
1dw1A00
A:1-112
1b
1dw1B00
B:1-112
1c
1dw1C00
C:1-112
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (64 KB)
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