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1DTJ
Asym. Unit
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Asym.Unit (48 KB)
Biol.Unit 1 (13 KB)
Biol.Unit 2 (11 KB)
Biol.Unit 3 (12 KB)
Biol.Unit 4 (12 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NOVA-2 KH3 K-HOMOLOGY RNA-BINDING DOMAIN
Authors
:
H. A. Lewis, H. Chen, C. Edo, R. J. Buckanovich, Y. Y. L. Yang, K. Musunuru, R. Zhong, R. B. Darnell, S. K. Burley
Date
:
12 Jan 00 (Deposition) - 18 Feb 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Kh Domain, Alpha-Beta Fold Rna-Binding Motif, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. A. Lewis, H. Chen, C. Edo, R. J. Buckanovich, Y. Y. Yang, K. Musunuru, R. Zhong, R. B. Darnell, S. K. Burley
Crystal Structures Of Nova-1 And Nova-2 K-Homology Rna-Binding Domains.
Structure Fold. Des. V. 7 191 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: KH_TYPE_1 (-|-|A:5-72,B:5-72,C:5-72,D:5-72)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KH_TYPE_1
PS50084
Type-1 KH domain profile.
NOVA2_HUMAN
32-99
130-196
406-473
4
-
-
A:5-72
B:5-72
C:5-72
D:5-72
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Exons
(1, 4)
Info
All Exons
Exon 1.4 (A:4-77 | B:4-79 (gaps) | C:4-77 (g...)
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All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000263257
1
ENSE00000858269
chr19:
46476657-46476525
133
NOVA2_HUMAN
1-29
29
0
-
-
1.2
ENST00000263257
2
ENSE00001706445
chr19:
46464411-46464268
144
NOVA2_HUMAN
29-77
49
0
-
-
1.3
ENST00000263257
3
ENSE00001112713
chr19:
46457204-46457038
167
NOVA2_HUMAN
77-132
56
0
-
-
1.4
ENST00000263257
4
ENSE00001112712
chr19:
46444203-46442771
1433
NOVA2_HUMAN
133-492
360
4
A:4-77
B:4-79 (gaps)
C:4-77 (gaps)
D:4-76 (gaps)
74
76
74
73
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1dtja_ (A:)
1b: SCOP_d1dtjb_ (B:)
1c: SCOP_d1dtjc_ (C:)
1d: SCOP_d1dtjd_ (D:)
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Protein Domains
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Eukaryotic type KH-domain (KH-domain type I)
(51)
Superfamily
:
Eukaryotic type KH-domain (KH-domain type I)
(51)
Family
:
Eukaryotic type KH-domain (KH-domain type I)
(40)
Protein domain
:
Neuro-oncological ventral antigen 2, nova-2, KH3
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1dtja_
A:
1b
d1dtjb_
B:
1c
d1dtjc_
C:
1d
d1dtjd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1dtjA00 (A:4-77)
1b: CATH_1dtjC00 (C:4-77)
1c: CATH_1dtjD00 (D:4-76)
1d: CATH_1dtjB00 (B:4-79)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Ribosomal Protein S8; Chain: A, domain 1
(139)
Homologous Superfamily
:
[code=3.30.1370.10, no name defined]
(23)
Human (Homo sapiens)
(13)
1a
1dtjA00
A:4-77
1b
1dtjC00
C:4-77
1c
1dtjD00
D:4-76
1d
1dtjB00
B:4-79
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Pfam Domains
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Show PDB file:
Asym.Unit (48 KB)
Header - Asym.Unit
Biol.Unit 1 (13 KB)
Header - Biol.Unit 1
Biol.Unit 2 (11 KB)
Header - Biol.Unit 2
Biol.Unit 3 (12 KB)
Header - Biol.Unit 3
Biol.Unit 4 (12 KB)
Header - Biol.Unit 4
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