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Getting 'Exon' information from database.
1DS6
Asym. Unit
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Asym.Unit (66 KB)
Biol.Unit 1 (62 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A RAC-RHOGDI COMPLEX
Authors
:
K. Scheffzek, I. Stephan, O. N. Jensen, D. Illenberger, P. Gierschik
Date
:
07 Jan 00 (Deposition) - 12 Jul 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Beta Sandwhich, Protein-Protein Complex, G-Domain, Immunoglobulin Fold, Walker Fold, Gtp-Binding Protein, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Scheffzek, I. Stephan, O. N. Jensen, D. Illenberger, P. Gierschik
The Rac-Rhogdi Complex And The Structural Basis For The Regulation Of Rho Proteins By Rhogdi.
Nat. Struct. Biol. V. 7 122 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:17 , THR A:35 , GDP A:194 , HOH A:509 , HOH A:539 , HOH A:550
BINDING SITE FOR RESIDUE MG A 193
2
AC2
SOFTWARE
ASP A:11 , GLY A:12 , ALA A:13 , VAL A:14 , GLY A:15 , LYS A:16 , THR A:17 , CYS A:18 , PHE A:28 , ILE A:33 , LYS A:116 , ASP A:118 , LEU A:119 , SER A:158 , ALA A:159 , LEU A:160 , MG A:193 , HOH A:531 , HOH A:539 , HOH A:547 , HOH A:550 , HOH A:576 , HOH A:592 , HOH A:593 , HOH A:628
BINDING SITE FOR RESIDUE GDP A 194
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036569 (P29L, chain A, )
2: VAR_017452 (D57N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036569
P
29
L
RAC2_HUMAN
Unclassified
---
A
P
29
L
2
UniProt
VAR_017452
D
57
N
RAC2_HUMAN
Disease (NEUID)
---
A
D
57
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RHO (A:1-176)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RAC2_HUMAN
1-176
1
A:1-176
[
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Exons
(11, 11)
Info
All Exons
Exon 1.2 (B:22-61)
Exon 1.3 (B:61-89)
Exon 1.4 (B:89-114)
Exon 1.5 (B:115-136)
Exon 1.6 (B:136-200)
Exon 2.1e (A:1-12)
Exon 2.2 (A:12-36)
Exon 2.4a (A:36-75)
Exon 2.5 (A:76-96)
Exon 2.6b (A:97-150)
Exon 2.7c (A:150-181)
View:
Select:
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All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/-
07: Boundary -/2.1e
08: Boundary 2.1e/2.2
09: Boundary 2.2/2.4a
10: Boundary 2.4a/2.5
11: Boundary 2.5/2.6b
12: Boundary 2.6b/2.7c
13: Boundary 2.7c/2.8d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000228945
1
ENSE00000999866
chr12:
15114562-15114471
92
GDIR2_HUMAN
-
0
0
-
-
1.2
ENST00000228945
2
ENSE00000822115
chr12:
15103658-15103466
193
GDIR2_HUMAN
1-61
61
1
B:22-61
40
1.3
ENST00000228945
3
ENSE00000723045
chr12:
15102819-15102736
84
GDIR2_HUMAN
61-89
29
1
B:61-89
29
1.4
ENST00000228945
4
ENSE00000723044
chr12:
15100883-15100807
77
GDIR2_HUMAN
89-114
26
1
B:89-114
26
1.5
ENST00000228945
5
ENSE00000723043
chr12:
15097773-15097710
64
GDIR2_HUMAN
115-136
22
1
B:115-136
22
1.6
ENST00000228945
6
ENSE00000999867
chr12:
15095655-15094950
706
GDIR2_HUMAN
136-201
66
1
B:136-200
65
2.1e
ENST00000249071
1e
ENSE00001045309
chr22:
37640310-37640154
157
RAC2_HUMAN
1-12
12
1
A:1-12
12
2.2
ENST00000249071
2
ENSE00001751320
chr22:
37637698-37637627
72
RAC2_HUMAN
12-36
25
1
A:12-36
25
2.4a
ENST00000249071
4a
ENSE00001771444
chr22:
37628958-37628841
118
RAC2_HUMAN
36-75
40
1
A:36-75
40
2.5
ENST00000249071
5
ENSE00000653854
chr22:
37628034-37627972
63
RAC2_HUMAN
76-96
21
1
A:76-96
21
2.6b
ENST00000249071
6b
ENSE00001668004
chr22:
37627430-37627271
160
RAC2_HUMAN
97-150
54
1
A:97-150
54
2.7c
ENST00000249071
7c
ENSE00000880141
chr22:
37622843-37622711
133
RAC2_HUMAN
150-192
43
1
A:150-181
32
2.8d
ENST00000249071
8d
ENSE00001875917
chr22:
37622079-37621301
779
RAC2_HUMAN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1ds6b_ (B:)
2a: SCOP_d1ds6a_ (A:)
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Classes
(
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(
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
RhoGDI-like
(34)
Protein domain
:
Rho GDP-dissociation inhibitor 1, RhoGDI
(16)
Human (Homo sapiens) [TaxId: 9606]
(12)
1a
d1ds6b_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Rac
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
2a
d1ds6a_
A:
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1ds6A00 (A:1-181)
2a: CATH_1ds6B00 (B:22-200)
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(
)
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)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1ds6A00
A:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Coagulation Factor XIII; Chain A, domain 1
(28)
Homologous Superfamily
:
Coagulation Factor XIII, subunit A, domain 1
(22)
Human (Homo sapiens)
(20)
2a
1ds6B00
B:22-200
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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