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1DRY
Asym. Unit
Info
Asym.Unit (65 KB)
Biol.Unit 1 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CLAVAMINATE SYNTHASE IN COMPLEX WITH FE(II), 2-OXOGLUTARATE AND N-ALPHA-L-ACETYL ARGININE
Authors
:
Z. H. Zhang, J. Ren, D. K. Stammers, J. E. Baldwin, K. Harlos, C. J. Schofi
Date
:
06 Jan 00 (Deposition) - 06 Jul 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxygenase, Trifunctional Enzyme, Clavaminate Synthase 1, Oxidoreductase, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhang, J. Ren, D. K. Stammers, J. E. Baldwin, K. Harlos, C. J. Schofield
Structural Origins Of The Selectivity Of The Trifunctional Oxygenase Clavaminic Acid Synthase.
Nat. Struct. Biol. V. 7 127 2000
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: N-ALPHA-L-ACETYL-ARGININE (AAGa)
2a: 2-OXOGLUTARIC ACID (AKGa)
3a: FE (II) ION (FE2a)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
AAG
1
Ligand/Ion
N-ALPHA-L-ACETYL-ARGININE
2
AKG
1
Ligand/Ion
2-OXOGLUTARIC ACID
3
FE2
1
Ligand/Ion
FE (II) ION
4
GOL
4
Ligand/Ion
GLYCEROL
5
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:132 , SER A:133 , SER A:134 , HIS A:144 , GLU A:146 , ASP A:202 , ASP A:233 , LEU A:236 , ARG A:297 , HOH A:419 , HOH A:572 , HOH A:624 , HOH A:625 , HOH A:626
BINDING SITE FOR RESIDUE AAG A 331
02
AC2
SOFTWARE
HIS A:144 , GLU A:146 , HIS A:279 , AKG A:330 , HOH A:625
BINDING SITE FOR RESIDUE FE2 A 332
03
AC3
SOFTWARE
THR A:48 , ARG A:191 , ARG A:195 , HOH A:542 , HOH A:568
BINDING SITE FOR RESIDUE SO4 A 901
04
AC4
SOFTWARE
ARG A:151 , ARG A:323 , GLY A:324 , HOH A:645 , HOH A:682
BINDING SITE FOR RESIDUE SO4 A 325
05
AC5
SOFTWARE
PRO A:21 , ARG A:22 , HOH A:385 , HOH A:695
BINDING SITE FOR RESIDUE SO4 A 903
06
AC6
SOFTWARE
LEU A:141 , HIS A:144 , GLU A:146 , THR A:172 , HIS A:279 , ARG A:281 , ARG A:293 , ARG A:297 , FE2 A:332 , HOH A:361 , HOH A:625
BINDING SITE FOR RESIDUE AKG A 330
07
AC7
SOFTWARE
LEU A:183 , LYS A:253 , GLU A:257 , HOH A:392 , HOH A:422 , HOH A:452 , HOH A:563 , HOH A:581 , HOH A:774
BINDING SITE FOR RESIDUE GOL A 328
08
AC8
SOFTWARE
PRO A:77 , ASP A:88 , ARG A:89 , SER A:90 , ASN A:305 , HOH A:359 , HOH A:443 , HOH A:459 , HOH A:642
BINDING SITE FOR RESIDUE GOL A 329
09
AC9
SOFTWARE
ASP A:194 , ARG A:195 , ARG A:196 , HOH A:472 , HOH A:743
BINDING SITE FOR RESIDUE GOL A 900
10
BC1
SOFTWARE
ARG A:19 , ARG A:168 , TYR A:263 , HOH A:647 , HOH A:708 , HOH A:712
BINDING SITE FOR RESIDUE GOL A 904
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1drya_ (A:)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Clavaminate synthase-like
(197)
Family
:
Clavaminate synthase
(5)
Protein domain
:
Clavaminate synthase
(5)
Streptomyces clavuligerus [TaxId: 1901]
(5)
1a
d1drya_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1dryA00 (A:2-324)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Double-stranded beta-helix
(19)
Homologous Superfamily
:
Clavaminate synthase-like
(19)
Streptomyces clavuligerus. Organism_taxid: 1901.
(5)
1a
1dryA00
A:2-324
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Pfam Domains
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Chain A
Asymmetric Unit 1
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