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1DQB
Asym. Unit
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Asym.Unit (275 KB)
Biol.Unit 1 (24 KB)
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Models
(12 )
Title
:
NMR STRUCTURE OF THROMBOMODULIN EGF(4-5)
Authors
:
M. J. Wood, B. A. Sampoli-Benitez, E. A. Komives
Date
:
03 Jan 00 (Deposition) - 06 Mar 00 (Release) - 13 Jul 11 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (12 x)
Biol. Unit 1: A (1x)
Keywords
:
Thrombin, Egf Module, Anticoagulant, Glycosylation, Membrane Protein
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Reference
:
M. J. Wood, B. A. Sampoli-Benitez, E. A. Komives
Solution Structure Of The Smallest Cofactor-Active Fragment Of Thrombomodulin.
Nat. Struct. Biol. V. 7 200 2000
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
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No.
Name
Count
Type
Full Name
1
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:18 , PRO A:19 , ASN A:21
BINDING SITE FOR RESIDUE NAG A 121
2
AC2
SOFTWARE
ALA A:34 , PRO A:35 , PHE A:46 , ASN A:48
BINDING SITE FOR RESIDUE NAG A 148
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (-|-|A:4-44|A:80-83)
2: EGF_2 (-|A:64-78)
3: EGF_CA (-|A:80-83)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
TRBM_HUMAN
284-324
325-361
365-405
441-481
2
-
-
A:4-44
A:80-83
2
EGF_2
PS01186
EGF-like domain signature 2.
TRBM_HUMAN
308-323
425-439
1
-
A:64-78
3
EGF_CA
PS01187
Calcium-binding EGF-like domain signature.
TRBM_HUMAN
325-349
441-464
1
-
A:80-83
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Exons
(1, 1)
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All Exons
Exon 1.1 (A:1-83)
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1: Boundary -/1.1
2: Boundary 1.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000377103
1
ENSE00001472793
chr20:
23030378-23026270
4109
TRBM_HUMAN
1-654
654
1
A:1-83
83
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d1dqba1 (A:1-44)
1b: SCOP_d1dqba2 (A:45-83)
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Organisms
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Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Thrombomodulin, different EGF-like domains
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1dqba1
A:1-44
1b
d1dqba2
A:45-83
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_1dqbA01 (A:1-46)
1b: CATH_1dqbA02 (A:47-83)
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Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Human (Homo sapiens)
(195)
1a
1dqbA01
A:1-46
1b
1dqbA02
A:47-83
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (275 KB)
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