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1DPP
Biol. Unit 4
Info
Asym.Unit (304 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (79 KB)
Biol.Unit 3 (79 KB)
Biol.Unit 4 (79 KB)
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(1)
Title
:
DIPEPTIDE BINDING PROTEIN COMPLEX WITH GLYCYL-L-LEUCINE
Authors
:
P. Dunten, S. L. Mowbray
Date
:
11 Aug 95 (Deposition) - 07 Dec 95 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,C,E,G
Biol. Unit 1: A (1x)
Biol. Unit 2: C (1x)
Biol. Unit 3: E (1x)
Biol. Unit 4: G (1x)
Keywords
:
Chemotaxis, Complex (Binding Protein/Peptide) Complex, Peptide Binding Protein
(Keyword Search:
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Reference
:
P. Dunten, S. L. Mowbray
Crystal Structure Of The Dipeptide Binding Protein From Escherichia Coli Involved In Active Transport And Chemotaxis.
Protein Sci. V. 4 2327 1995
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GLYCINE (GLYa)
1b: GLYCINE (GLYb)
1c: GLYCINE (GLYc)
1d: GLYCINE (GLYd)
2a: LEUCINE (LEUa)
2b: LEUCINE (LEUb)
2c: LEUCINE (LEUc)
2d: LEUCINE (LEUd)
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No.
Name
Count
Type
Full Name
1
GLY
1
Mod. Amino Acid
GLYCINE
2
LEU
1
Mod. Amino Acid
LEUCINE
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Sites
(2, 2)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
THR G:20 , TYR G:114 , TRP G:405 , THR G:406 , ASP G:408 , LEU G:1002
BINDING SITE FOR RESIDUE GLY G 1001
2
AC8
SOFTWARE
THR G:20 , SER G:21 , GLY G:22 , ARG G:355 , TYR G:357 , MET G:403 , GLY G:404 , GLY G:1001
BINDING SITE FOR RESIDUE LEU G 1002
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_5 (G:51-73)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_5
PS01040
Bacterial extracellular solute-binding proteins, family 5 signature.
DPPA_ECOLI
79-101
1
-
-
-
G:51-73
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1dppa_ (A:)
1b: SCOP_d1dppc_ (C:)
1c: SCOP_d1dppe_ (E:)
1d: SCOP_d1dppg_ (G:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Dipeptide-binding protein
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d1dppa_
A:
1b
d1dppc_
C:
1c
d1dppe_
E:
1d
d1dppg_
G:
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1dppA02 (A:1-9,A:179-259,A:479-507)
1b: CATH_1dppC02 (C:1-9,C:179-259,C:479-507)
1c: CATH_1dppE02 (E:1-9,E:179-259,E:479-507)
1d: CATH_1dppG02 (G:1-9,G:179-259,G:479-507)
2a: CATH_1dppA01 (A:10-178)
2b: CATH_1dppC01 (C:10-178)
2c: CATH_1dppE01 (E:10-178)
2d: CATH_1dppG01 (G:10-178)
3a: CATH_1dppA03 (A:260-478)
3b: CATH_1dppC03 (C:260-478)
3c: CATH_1dppE03 (E:260-478)
3d: CATH_1dppG03 (G:260-478)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Escherichia coli. Organism_taxid: 562
(6)
1a
1dppA02
A:1-9,A:179-259,A:479-507
1b
1dppC02
C:1-9,C:179-259,C:479-507
1c
1dppE02
E:1-9,E:179-259,E:479-507
1d
1dppG02
G:1-9,G:179-259,G:479-507
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Dipeptide-binding Protein; domain 1
(35)
Homologous Superfamily
:
Dipeptide-binding Protein; Domain 1
(35)
Escherichia coli. Organism_taxid: 562
(1)
2a
1dppA01
A:10-178
2b
1dppC01
C:10-178
2c
1dppE01
E:10-178
2d
1dppG01
G:10-178
Architecture
:
Roll
(3276)
Topology
:
Dipeptide-binding Protein; domain 3
(35)
Homologous Superfamily
:
Dipeptide-binding Protein; Domain 3
(35)
Escherichia coli. Organism_taxid: 562
(1)
3a
1dppA03
A:260-478
3b
1dppC03
C:260-478
3c
1dppE03
E:260-478
3d
1dppG03
G:260-478
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Pfam Domains
(0, 0)
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Chain G
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (304 KB)
Header - Asym.Unit
Biol.Unit 1 (79 KB)
Header - Biol.Unit 1
Biol.Unit 2 (79 KB)
Header - Biol.Unit 2
Biol.Unit 3 (79 KB)
Header - Biol.Unit 3
Biol.Unit 4 (79 KB)
Header - Biol.Unit 4
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