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1DOG
Asym. Unit
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Asym.Unit (98 KB)
Biol.Unit 1 (91 KB)
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(1)
Title
:
REFINED STRUCTURE FOR THE COMPLEX OF 1-DEOXYNOJIRIMYCIN WITH GLUCOAMYLASE FROM (ASPERGILLUS AWAMORI) VAR. X100 TO 2.4 ANGSTROMS RESOLUTION
Authors
:
E. Harris, A. Aleshin, L. Firsov, R. B. Honzatko
Date
:
12 Jan 93 (Deposition) - 31 Jan 94 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. M. Harris, A. E. Aleshin, L. M. Firsov, R. B. Honzatko
Refined Structure For The Complex Of 1-Deoxynojirimycin Wit Glucoamylase From Aspergillus Awamori Var. X100 To 2. 4-A Resolution.
Biochemistry V. 32 1618 1993
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 25)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
2p: ALPHA-D-MANNOSE (MANp)
2q: ALPHA-D-MANNOSE (MANq)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4a: 1-DEOXYNOJIRIMYCIN (NOJa)
4b: 1-DEOXYNOJIRIMYCIN (NOJb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
MAN
17
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NOJ
2
Ligand/Ion
1-DEOXYNOJIRIMYCIN
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:171 , THR A:173 , SER A:184 , TYR A:223 , CYS A:449 , ALA A:451 , NAG A:473B , HOH A:515 , HOH A:527 , HOH A:655 , HOH A:660 , HOH A:718
BINDING SITE FOR RESIDUE NAG A 472A
02
AC2
SOFTWARE
PHE A:237 , CYS A:449 , NAG A:472A , BMA A:474C , HOH A:655
BINDING SITE FOR RESIDUE NAG A 473B
03
AC3
SOFTWARE
NAG A:473B , MAN A:475D
BINDING SITE FOR RESIDUE BMA A 474C
04
AC4
SOFTWARE
SER A:226 , PHE A:237 , BMA A:474C , MAN A:476G
BINDING SITE FOR RESIDUE MAN A 475D
05
AC5
SOFTWARE
ASN A:236 , PHE A:237 , ASP A:238 , SER A:239 , MAN A:475D , HOH A:739
BINDING SITE FOR RESIDUE MAN A 476G
06
AC6
SOFTWARE
TRP A:28 , ASN A:395 , SER A:397 , ASP A:414 , NAG A:478B , HOH A:700
BINDING SITE FOR RESIDUE NAG A 477A
07
AC7
SOFTWARE
ARG A:413 , NAG A:477A , BMA A:479C , MAN A:482E , MAN A:483F , HOH A:513 , HOH A:700 , HOH A:791
BINDING SITE FOR RESIDUE NAG A 478B
08
AC8
SOFTWARE
ARG A:413 , NAG A:478B , MAN A:480D , MAN A:482E , HOH A:688 , HOH A:706 , HOH A:854
BINDING SITE FOR RESIDUE BMA A 479C
09
AC9
SOFTWARE
BMA A:479C , MAN A:481G , HOH A:813 , HOH A:893
BINDING SITE FOR RESIDUE MAN A 480D
10
BC1
SOFTWARE
SER A:30 , PRO A:41 , THR A:43 , PHE A:49 , MAN A:480D , MAN A:484H , HOH A:645 , HOH A:744 , HOH A:893
BINDING SITE FOR RESIDUE MAN A 481G
11
BC2
SOFTWARE
NAG A:478B , BMA A:479C , MAN A:483F , HOH A:748 , HOH A:785 , HOH A:865 , HOH A:935
BINDING SITE FOR RESIDUE MAN A 482E
12
BC3
SOFTWARE
SER A:42 , ASN A:45 , SER A:411 , ARG A:413 , NAG A:478B , MAN A:482E , HOH A:694 , HOH A:1035 , HOH A:1043
BINDING SITE FOR RESIDUE MAN A 483F
13
BC4
SOFTWARE
THR A:43 , ASP A:44 , MAN A:481G
BINDING SITE FOR RESIDUE MAN A 484H
14
BC5
SOFTWARE
ASP A:263 , GLU A:439 , THR A:440 , SER A:441 , ALA A:442 , SER A:443 , SER A:444 , HOH A:623 , HOH A:787 , HOH A:949 , HOH A:978 , HOH A:1097
BINDING SITE FOR RESIDUE MAN A 485
15
BC6
SOFTWARE
SER A:444 , PRO A:446 , HOH A:585 , HOH A:787 , HOH A:1013
BINDING SITE FOR RESIDUE MAN A 486
16
BC7
SOFTWARE
THR A:452 , SER A:453 , HOH A:630 , HOH A:678 , HOH A:722 , HOH A:866 , HOH A:1046
BINDING SITE FOR RESIDUE MAN A 487
17
BC8
SOFTWARE
SER A:119 , GLU A:153 , GLN A:168 , SER A:453 , HOH A:783 , HOH A:962 , HOH A:995
BINDING SITE FOR RESIDUE MAN A 488
18
BC9
SOFTWARE
TRP A:120 , GLN A:168 , TYR A:175 , SER A:455 , TYR A:458 , HOH A:533 , HOH A:552 , HOH A:589 , HOH A:930 , HOH A:947 , HOH A:997
BINDING SITE FOR RESIDUE MAN A 489
19
CC1
SOFTWARE
ARG A:122 , PRO A:123 , ARG A:125 , ARG A:160 , THR A:173 , GLY A:174 , ASN A:182 , THR A:457 , MAN A:491 , HOH A:544 , HOH A:859 , HOH A:888
BINDING SITE FOR RESIDUE MAN A 490
20
CC2
SOFTWARE
PRO A:157 , ARG A:160 , GLN A:172 , THR A:173 , SER A:459 , SER A:460 , MAN A:490 , HOH A:557 , HOH A:608 , HOH A:672 , HOH A:693 , HOH A:912
BINDING SITE FOR RESIDUE MAN A 491
21
CC3
SOFTWARE
ALA A:86 , ILE A:87 , GLY A:90 , SER A:460 , VAL A:461 , HOH A:646 , HOH A:698
BINDING SITE FOR RESIDUE MAN A 492
22
CC4
SOFTWARE
SER A:460 , VAL A:461 , THR A:462 , MAN A:494 , HOH A:776 , HOH A:838
BINDING SITE FOR RESIDUE MAN A 493
23
CC5
SOFTWARE
GLU A:153 , THR A:462 , THR A:464 , MAN A:493 , HOH A:778
BINDING SITE FOR RESIDUE MAN A 494
24
CC6
SOFTWARE
ALA A:39 , TYR A:48 , TRP A:52 , ARG A:54 , ASP A:55 , LEU A:177 , TRP A:178 , ARG A:305 , TRP A:417 , NOJ A:496 , HOH A:501 , HOH A:634 , HOH A:1202
BINDING SITE FOR RESIDUE NOJ A 495
25
CC7
SOFTWARE
LEU A:143 , TRP A:178 , GLU A:179 , GLU A:180 , ARG A:305 , TYR A:311 , NOJ A:495 , HOH A:634 , HOH A:1064 , HOH A:1200 , HOH A:1201 , HOH A:1202
BINDING SITE FOR RESIDUE NOJ A 496
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GLUCOAMYLASE (A:173-183,A:173-183)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUCOAMYLASE
PS00820
Glucoamylase active site region signature.
AMYG_ASPKA
196-206
1
A:173-183
AMYG_ASPAW
197-207
1
A:173-183
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1doga_ (A:)
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Classes
(
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(
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Folds
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Six-hairpin glycosidases
(109)
Family
:
Glucoamylase
(10)
Protein domain
:
Glucoamylase
(9)
Aspergillus awamori, variant x100 [TaxId: 105351]
(6)
1a
d1doga_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1dogA00 (A:1-471)
View:
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(
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Architectures
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.10, no name defined]
(67)
Aspergillus awamori. Organism_taxid: 105351
(4)
1a
1dogA00
A:1-471
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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