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Getting 'Exon' information from database.
1DNU
Asym. Unit
Info
Asym.Unit (216 KB)
Biol.Unit 1 (208 KB)
Biol.Unit 2 (107 KB)
Biol.Unit 3 (106 KB)
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(1)
Title
:
STRUCTURAL ANALYSES OF HUMAN MYELOPEROXIDASE-THIOCYANATE COMPLEX
Authors
:
M. Blair-Johnson, T. J. Fiedler, R. E. Fenna
Date
:
16 Dec 99 (Deposition) - 21 Dec 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,C (1x)
Keywords
:
Oxidoreductase, Peroxidase, Inhibitor Complex Thiocyanate, Halide Peroxidation, Neutrophil
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Blair-Johnson, T. Fiedler, R. Fenna
Human Myeloperoxidase: Structure Of A Cyanide Complex And Its Interaction With Bromide And Thiocyanate Substrates At 1. 9 A Resolution.
Biochemistry V. 40 13990 2001
[
close entry info
]
Hetero Components
(10, 35)
Info
All Hetero Components
01a: ACETIC ACID (ACYa)
01b: ACETIC ACID (ACYb)
01c: ACETIC ACID (ACYc)
01d: ACETIC ACID (ACYd)
01e: ACETIC ACID (ACYe)
01f: ACETIC ACID (ACYf)
02a: BETA-D-MANNOSE (BMAa)
02b: BETA-D-MANNOSE (BMAb)
03a: CALCIUM ION (CAa)
03b: CALCIUM ION (CAb)
04a: S-HYDROXYCYSTEINE (CSOa)
04b: S-HYDROXYCYSTEINE (CSOb)
05a: ALPHA-L-FUCOSE (FUCa)
05b: ALPHA-L-FUCOSE (FUCb)
06a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
06b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
07a: ALPHA-D-MANNOSE (MANa)
07b: ALPHA-D-MANNOSE (MANb)
07c: ALPHA-D-MANNOSE (MANc)
07d: ALPHA-D-MANNOSE (MANd)
08a: N-ACETYL-D-GLUCOSAMINE (NAGa)
08b: N-ACETYL-D-GLUCOSAMINE (NAGb)
08c: N-ACETYL-D-GLUCOSAMINE (NAGc)
08d: N-ACETYL-D-GLUCOSAMINE (NAGd)
08e: N-ACETYL-D-GLUCOSAMINE (NAGe)
08f: N-ACETYL-D-GLUCOSAMINE (NAGf)
08g: N-ACETYL-D-GLUCOSAMINE (NAGg)
08h: N-ACETYL-D-GLUCOSAMINE (NAGh)
09a: THIOCYANATE ION (SCNa)
09b: THIOCYANATE ION (SCNb)
09c: THIOCYANATE ION (SCNc)
09d: THIOCYANATE ION (SCNd)
10a: SULFATE ION (SO4a)
10b: SULFATE ION (SO4b)
10c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
6
Ligand/Ion
ACETIC ACID
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
CA
2
Ligand/Ion
CALCIUM ION
4
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
5
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
6
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
7
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
8
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
SCN
4
Ligand/Ion
THIOCYANATE ION
10
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN C:189 , ASN C:192 , ALA C:198 , VAL C:199 , GLN C:201 , HOH C:901
BINDING SITE FOR RESIDUE NAG C 620
02
AC2
SOFTWARE
ASN C:225 , ALA C:228 , TRP C:369 , LEU C:373
BINDING SITE FOR RESIDUE NAG C 630
03
AC3
SOFTWARE
ASN C:317 , VAL C:320 , NAG C:641 , FUC C:645 , HOH C:646 , HOH C:797 , HOH D:647
BINDING SITE FOR RESIDUE NAG C 640
04
AC4
SOFTWARE
LEU B:33 , SER C:319 , NAG C:640 , BMA C:642 , HOH C:756 , HOH C:967 , ARG D:438 , PHE D:439 , GLY D:441 , HOH D:647
BINDING SITE FOR RESIDUE NAG C 641
05
AC5
SOFTWARE
NAG C:641 , MAN C:643 , MAN C:644 , HOH C:968 , PHE D:439 , HOH D:747
BINDING SITE FOR RESIDUE BMA C 642
06
AC6
SOFTWARE
BMA C:642 , LYS D:308
BINDING SITE FOR RESIDUE MAN C 643
07
AC7
SOFTWARE
TRP B:32 , BMA C:642 , HOH C:973 , PHE D:439 , LYS D:505 , FUC D:645 , HOH D:766
BINDING SITE FOR RESIDUE MAN C 644
08
AC8
SOFTWARE
ARG C:504 , NAG C:640 , HOH C:773 , MAN D:644 , HOH D:649 , HOH D:652
BINDING SITE FOR RESIDUE FUC C 645
09
AC9
SOFTWARE
ASN D:189 , ASN D:192 , ALA D:198 , VAL D:199 , GLN D:201 , HOH D:707
BINDING SITE FOR RESIDUE NAG D 620
10
BC1
SOFTWARE
ASN D:225 , ALA D:228 , TRP D:369
BINDING SITE FOR RESIDUE NAG D 630
11
BC2
SOFTWARE
HOH C:969 , ASN D:317 , VAL D:320 , NAG D:641 , FUC D:645 , HOH D:660 , HOH D:805
BINDING SITE FOR RESIDUE NAG D 640
12
BC3
SOFTWARE
LEU A:33 , ARG C:438 , PHE C:439 , GLY C:441 , HOH C:969 , SER D:319 , NAG D:640 , BMA D:642 , HOH D:646 , HOH D:767 , HOH D:835
BINDING SITE FOR RESIDUE NAG D 641
13
BC4
SOFTWARE
PHE C:439 , HOH C:735 , HOH C:736 , NAG D:641 , MAN D:643 , MAN D:644
BINDING SITE FOR RESIDUE BMA D 642
14
BC5
SOFTWARE
LYS C:308 , BMA D:642
BINDING SITE FOR RESIDUE MAN D 643
15
BC6
SOFTWARE
TRP A:32 , PHE C:439 , LYS C:505 , FUC C:645 , BMA D:642 , HOH D:649 , HOH D:652 , HOH D:657 , HOH D:826
BINDING SITE FOR RESIDUE MAN D 644
16
BC7
SOFTWARE
MAN C:644 , HOH C:973 , ARG D:504 , NAG D:640 , HOH D:766 , HOH D:784
BINDING SITE FOR RESIDUE FUC D 645
17
BC8
SOFTWARE
ASP A:96 , THR C:168 , PHE C:170 , ASP C:172 , SER C:174
BINDING SITE FOR RESIDUE CA C 1
18
BC9
SOFTWARE
ARG A:31 , TRP A:32 , LEU A:33 , ASN C:326 , VAL C:327 , LEU C:430 , TRP C:436
BINDING SITE FOR RESIDUE SCN A 105
19
CC1
SOFTWARE
THR A:73 , HOH A:179 , HOH A:185 , ASP C:400 , ARG C:405
BINDING SITE FOR RESIDUE SO4 A 106
20
CC2
SOFTWARE
ARG C:229 , THR C:447 , GLY C:449 , GLN C:450
BINDING SITE FOR RESIDUE SO4 C 9
21
CC3
SOFTWARE
GLN A:91 , HIS A:95 , HOH A:156 , GLU C:242
BINDING SITE FOR RESIDUE SCN A 107
22
CC4
SOFTWARE
ASP B:96 , THR D:168 , PHE D:170 , ASP D:172 , SER D:174
BINDING SITE FOR RESIDUE CA D 2
23
CC5
SOFTWARE
ARG B:31 , TRP B:32 , LEU B:33 , ASN D:326 , VAL D:327 , TRP D:436
BINDING SITE FOR RESIDUE SCN B 105
24
CC6
SOFTWARE
THR B:73 , ARG D:405 , HOH D:792
BINDING SITE FOR RESIDUE SO4 D 7
25
CC7
SOFTWARE
GLN B:91 , HIS B:95 , HOH B:634 , ARG D:239 , GLU D:242
BINDING SITE FOR RESIDUE SCN B 106
26
CC8
SOFTWARE
MET A:87 , GLY A:90 , GLN A:91 , ASP A:94 , ASP A:98 , PHE A:99 , THR A:100 , HOH A:156 , ARG C:239 , GLU C:242 , MET C:243 , THR C:329 , PHE C:332 , ARG C:333 , GLY C:335 , HIS C:336 , ILE C:339 , PHE C:365 , PHE C:407 , LEU C:417 , ARG C:424 , HOH C:752 , HOH C:785
BINDING SITE FOR RESIDUE HEM C 10
27
CC9
SOFTWARE
MET B:87 , GLY B:90 , GLN B:91 , ASP B:94 , ASP B:98 , PHE B:99 , THR B:100 , HOH B:589 , HOH B:634 , HOH B:636 , ARG D:239 , GLU D:242 , MET D:243 , THR D:329 , PHE D:332 , ARG D:333 , GLY D:335 , HIS D:336 , PHE D:365 , PHE D:407 , LEU D:417 , ARG D:424
BINDING SITE FOR RESIDUE HEM B 107
28
DC1
SOFTWARE
PRO C:123 , PRO C:124 , ARG C:161 , HOH C:655 , HOH C:950 , HOH C:960
BINDING SITE FOR RESIDUE ACY C 15
29
DC2
SOFTWARE
ARG C:525
BINDING SITE FOR RESIDUE ACY C 17
30
DC3
SOFTWARE
ARG C:307 , ARG C:487
BINDING SITE FOR RESIDUE ACY C 16
31
DC4
SOFTWARE
ARG D:161 , HOH D:668
BINDING SITE FOR RESIDUE ACY D 14
32
DC5
SOFTWARE
MET D:522 , ARG D:525
BINDING SITE FOR RESIDUE ACY D 13
33
DC6
SOFTWARE
PRO D:303 , ARG D:307 , ARG D:487 , LYS D:488
BINDING SITE FOR RESIDUE ACY D 12
[
close Site info
]
SAPs(SNPs)/Variants
(8, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_015377 (Y7C, chain A/B, )
2: VAR_015378 (M85T, chain A/B, )
3: VAR_036517 (R281Q, chain C/D, )
4: VAR_PERM_HUMAN_CCDS11604_1_01 (R281Q, chain C/D, )
5: VAR_015379 (R403W, chain C/D, )
6: VAR_023996 (R438C, chain C/D, )
7: VAR_023997 (E517Q, chain C/D, )
8: VAR_012066 (I551V, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_015377
Y
173
C
PERM_HUMAN
Disease (MPOD)
78950939
A/B
Y
7
C
2
UniProt
VAR_015378
M
251
T
PERM_HUMAN
Disease (MPOD)
56378716
A/B
M
85
T
3
UniProt
VAR_036517
R
447
Q
PERM_HUMAN
Unclassified
---
C/D
R
281
Q
4
CancerSNP
VAR_PERM_HUMAN_CCDS11604_1_01
*
R
447
Q
PERM_HUMAN
Disease (Colorectal cancer)
---
C/D
R
281
Q
5
UniProt
VAR_015379
R
569
W
PERM_HUMAN
Disease (MPOD)
---
C/D
R
403
W
6
UniProt
VAR_023996
R
604
C
PERM_HUMAN
Polymorphism
35670089
C/D
R
438
C
7
UniProt
VAR_023997
E
683
Q
PERM_HUMAN
Polymorphism
35702888
C/D
E
517
Q
8
UniProt
VAR_012066
I
717
V
PERM_HUMAN
Polymorphism
2759
C/D
I
551
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_1 (C:242-252,D:242-252)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
PERM_HUMAN
408-418
2
C:242-252
D:242-252
[
close PROSITE info
]
Exons
(9, 20)
Info
All Exons
Exon 1.4a (A:1-17 | B:1-17 | - | -)
Exon 1.4c (A:17-60 | B:17-60 | - | -)
Exon 1.5 (A:61-104 | B:61-104 | C:113-129 | ...)
Exon 1.6 (- | - | C:130-236 | D:130-236)
Exon 1.7 (- | - | C:236-289 | D:236-289)
Exon 1.9 (- | - | C:290-375 | D:290-375)
Exon 1.10 (- | - | C:375-432 | D:375-432)
Exon 1.11 (- | - | C:432-511 | D:432-511)
Exon 1.12 (- | - | C:511-578 | D:511-578)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.3/1.4a
02: Boundary 1.4a/1.4c
03: Boundary 1.4c/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000225275
1
ENSE00001151667
chr17:
56358296-56357966
331
PERM_HUMAN
1-52
52
0
-
-
1.2
ENST00000225275
2
ENSE00000739393
chr17:
56357820-56357727
94
PERM_HUMAN
52-83
32
0
-
-
1.3
ENST00000225275
3
ENSE00000739378
chr17:
56357375-56357200
176
PERM_HUMAN
83-142
60
0
-
-
1.4a
ENST00000225275
4a
ENSE00000739375
chr17:
56357007-56356884
124
PERM_HUMAN
142-183
42
2
A:1-17
B:1-17
-
-
17
17
-
-
1.4c
ENST00000225275
4c
ENSE00000739356
chr17:
56356787-56356658
130
PERM_HUMAN
183-226
44
2
A:17-60
B:17-60
-
-
44
44
-
-
1.5
ENST00000225275
5
ENSE00000480273
chr17:
56356575-56356369
207
PERM_HUMAN
227-295
69
4
A:61-104
B:61-104
C:113-129
D:113-129
44
44
17
17
1.6
ENST00000225275
6
ENSE00000480274
chr17:
56355506-56355188
319
PERM_HUMAN
296-402
107
2
-
-
C:130-236
D:130-236
-
-
107
107
1.7
ENST00000225275
7
ENSE00000739352
chr17:
56353063-56352903
161
PERM_HUMAN
402-455
54
2
-
-
C:236-289
D:236-289
-
-
54
54
1.9
ENST00000225275
9
ENSE00000480276
chr17:
56351030-56350775
256
PERM_HUMAN
456-541
86
2
-
-
C:290-375
D:290-375
-
-
86
86
1.10
ENST00000225275
10
ENSE00001743415
chr17:
56350279-56350109
171
PERM_HUMAN
541-598
58
2
-
-
C:375-432
D:375-432
-
-
58
58
1.11
ENST00000225275
11
ENSE00000739347
chr17:
56349253-56349016
238
PERM_HUMAN
598-677
80
2
-
-
C:432-511
D:432-511
-
-
80
80
1.12
ENST00000225275
12
ENSE00001151664
chr17:
56348224-56347217
1008
PERM_HUMAN
677-745
69
2
-
-
C:511-578
D:511-578
-
-
68
68
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1dnu_1 (A:,C:)
1b: SCOP_d1dnu_2 (B:,D:)
View:
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Classes
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)
(
)
Folds
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
Myeloperoxidase-like
(44)
Protein domain
:
Myeloperoxidase
(8)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1dnu.1
A:,C:
1b
d1dnu.2
B:,D:
[
close SCOP info
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1dnuC00 (C:113-578)
1b: CATH_1dnuD00 (D:113-578)
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Classes
(
)
(
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Architectures
(
)
(
)
Topologies
(
)
(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Myeloperoxidase, subunit C
(39)
Homologous Superfamily
:
Myeloperoxidase, subunit C
(39)
Human (Homo sapiens)
(7)
1a
1dnuC00
C:113-578
1b
1dnuD00
D:113-578
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asym.Unit (216 KB)
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