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1DN0
Biol. Unit 1
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Asym.Unit (151 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (75 KB)
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(1)
Title
:
STRUCTURE OF THE FAB FRAGMENT FROM A HUMAN IGM COLD AGGLUTININ
Authors
:
A. Cauerhff, B. Braden, J. G. Carvalho, J. Leoni, I. Polikarpov, F. Goldbaum
Date
:
15 Dec 99 (Deposition) - 24 Jan 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.28
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Fab, Igm, Antibody, Cold Agglutinin, Human, Immune System
(Keyword Search:
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Reference
:
A. Cauerhff, B. C. Braden, J. G. Carvalho, R. Aparicio, I. Polikarpov, J. Leoni, F. A. Goldbaum
Three-Dimensional Structure Of The Fab From A Human Igm Cold Agglutinin.
J. Immunol. V. 165 6422 2000
(for further references see the
PDB file header
)
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Hetero Components
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Sites
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Exons
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SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1dn0b2 (B:121-225)
1b: SCOP_d1dn0d2 (D:121-225)
2a: SCOP_d1dn0a2 (A:108-215)
2b: SCOP_d1dn0c2 (C:108-215)
3a: SCOP_d1dn0b1 (B:1-120)
3b: SCOP_d1dn0d1 (D:1-120)
4a: SCOP_d1dn0a1 (A:1-107)
4b: SCOP_d1dn0c1 (C:1-107)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain mu constant domain 1, CH1-mu
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1dn0b2
B:121-225
1b
d1dn0d2
D:121-225
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Human (Homo sapiens) [TaxId: 9606]
(144)
2a
d1dn0a2
A:108-215
2b
d1dn0c2
C:108-215
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
(3)
3a
d1dn0b1
B:1-120
3b
d1dn0d1
D:1-120
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Human (Homo sapiens), cluster 3.1 [TaxId: 9606]
(8)
4a
d1dn0a1
A:1-107
4b
d1dn0c1
C:1-107
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1dn0A02 (A:110-212)
1b: CATH_1dn0A01 (A:1-109)
1c: CATH_1dn0C01 (C:1-109)
1d: CATH_1dn0B01 (B:1-120)
1e: CATH_1dn0D01 (D:1-120)
1f: CATH_1dn0D02 (D:121-222)
1g: CATH_1dn0B02 (B:121-222)
1h: CATH_1dn0C02 (C:110-212)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1dn0A02
A:110-212
1b
1dn0A01
A:1-109
1c
1dn0C01
C:1-109
1d
1dn0B01
B:1-120
1e
1dn0D01
D:1-120
1f
1dn0D02
D:121-222
1g
1dn0B02
B:121-222
1h
1dn0C02
C:110-212
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Pfam Domains
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Asym.Unit (151 KB)
Header - Asym.Unit
Biol.Unit 1 (75 KB)
Header - Biol.Unit 1
Biol.Unit 2 (75 KB)
Header - Biol.Unit 2
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