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1DMS
Asym. Unit
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Asym.Unit (133 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
STRUCTURE OF DMSO REDUCTASE
Authors
:
F. Schneider, J. Loewe, R. Huber, H. Schindelin, C. Kisker, J. Knaeblein
Date
:
03 Sep 96 (Deposition) - 01 Jul 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.88
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Dmso Reductase, Molydopterin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Schneider, J. Lowe, R. Huber, H. Schindelin, C. Kisker, J. Knablein
Crystal Structure Of Dimethyl Sulfoxide Reductase From Rhodobacter Capsulatus At 1. 88 A Resolution.
J. Mol. Biol. V. 263 53 1996
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: MOLYBDENUM (IV) OXIDE (MM4a)
2a: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (PGDa)
2b: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (PGDb)
View:
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No.
Name
Count
Type
Full Name
1
MM4
1
Ligand/Ion
MOLYBDENUM (IV) OXIDE
2
PGD
2
Ligand/Ion
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:114 , GLY A:115 , TRP A:116 , LYS A:117 , SER A:118 , TYR A:146 , SER A:147 , ARG A:326 , GLY A:432 , GLY A:433 , ASN A:434 , HIS A:438 , GLN A:440 , HIS A:458 , ASP A:459 , PHE A:460 , THR A:463 , ALA A:475 , ARG A:481 , ASP A:511 , ALA A:641 , HIS A:643 , HIS A:649 , SER A:650 , GLN A:651 , GLU A:715 , ASN A:737 , GLY A:754 , GLN A:755 , MM4 A:784 , HOH A:979 , HOH A:983 , HOH A:997 , HOH A:1014
BINDING SITE FOR RESIDUE PGD A 782
2
AC2
SOFTWARE
TRP A:116 , SER A:147 , ALA A:185 , LYS A:190 , THR A:191 , GLN A:193 , ILE A:220 , ASP A:221 , PRO A:222 , VAL A:223 , THR A:225 , PRO A:240 , GLN A:241 , ASP A:243 , GLY A:321 , TRP A:322 , SER A:323 , ARG A:326 , MET A:327 , HIS A:359 , SER A:642 , HIS A:643 , PRO A:644 , PHE A:645 , ARG A:647 , LEU A:648 , HIS A:649 , GLN A:755 , MM4 A:784 , HOH A:865 , HOH A:866 , HOH A:869 , HOH A:984
BINDING SITE FOR RESIDUE PGD A 783
3
AC3
SOFTWARE
TYR A:114 , TRP A:116 , ASP A:145 , TYR A:146 , SER A:147 , PGD A:782 , PGD A:783
BINDING SITE FOR RESIDUE MM4 A 784
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: MOLYBDOPTERIN_PROK_2 (A:463-480)
2: MOLYBDOPTERIN_PROK_3 (A:676-703)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MOLYBDOPTERIN_PROK_2
PS00490
Prokaryotic molybdopterin oxidoreductases signature 2.
DSTOR_RHOCA
505-522
1
A:463-480
2
MOLYBDOPTERIN_PROK_3
PS00932
Prokaryotic molybdopterin oxidoreductases signature 3.
DSTOR_RHOCA
718-745
1
A:676-703
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1dmsa1 (A:626-781)
2a: SCOP_d1dmsa2 (A:3-625)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double psi beta-barrel
(111)
Superfamily
:
ADC-like
(88)
Family
:
Formate dehydrogenase/DMSO reductase, C-terminal domain
(41)
Protein domain
:
Dimethylsulfoxide reductase (DMSO reductase)
(11)
Rhodobacter capsulatus [TaxId: 1061]
(10)
1a
d1dmsa1
A:626-781
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Formate dehydrogenase/DMSO reductase, domains 1-3
(53)
Superfamily
:
Formate dehydrogenase/DMSO reductase, domains 1-3
(53)
Family
:
Formate dehydrogenase/DMSO reductase, domains 1-3
(53)
Protein domain
:
Dimethylsulfoxide reductase (DMSO reductase)
(11)
Rhodobacter capsulatus [TaxId: 1061]
(10)
2a
d1dmsa2
A:3-625
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CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_1dmsA02 (A:147-366,A:579-604)
2a: CATH_1dmsA01 (A:54-145,A:378-481,A:507-529)
3a: CATH_1dmsA03 (A:5-32,A:482-499,A:530-570)
4a: CATH_1dmsA04 (A:612-774)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Dimethylsulfoxide Reductase; domain 2
(37)
Homologous Superfamily
:
Dimethylsulfoxide Reductase, domain 2
(37)
Rhodobacter capsulatus. Organism_taxid: 1061. Strain: 37b4.
(1)
1a
1dmsA02
A:147-366,A:579-604
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.740, no name defined]
(37)
Rhodobacter capsulatus. Organism_taxid: 1061. Strain: 37b4.
(1)
2a
1dmsA01
A:54-145,A:378-481,A:507-529
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Dimethylsulfoxide Reductase; domain 3
(12)
Homologous Superfamily
:
Dimethylsulfoxide Reductase, domain 3
(12)
Rhodobacter capsulatus. Organism_taxid: 1061. Strain: 37b4.
(1)
3a
1dmsA03
A:5-32,A:482-499,A:530-570
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Barwin-like endoglucanases
(75)
Homologous Superfamily
:
[code=2.40.40.20, no name defined]
(63)
Rhodobacter capsulatus. Organism_taxid: 1061. Strain: 37b4.
(1)
4a
1dmsA04
A:612-774
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (133 KB)
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