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1DMK
Asym. Unit
Info
Asym.Unit (155 KB)
Biol.Unit 1 (148 KB)
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(1)
Title
:
BOVINE ENDOTHELIAL NITRIC OXIDE SYNTHASE HEME DOMAIN COMPLEXED WITH 4-AMINO-6-PHENYL-TETRAHYDROPTERIDINE
Authors
:
P. Kotsonis, L. G. Frohlich, C. S. Raman, H. Li, M. Berg, R. Gerwig, V. Gro Y. Kang, N. Al-Masoudi, S. Taghavi-Moghadam, D. Mohr, U. Munch, J. Sch P. Martasek, B. S. Masters, H. Strobel, T. Poulos, H. Matter, W. Pfleid H. H. Schmidt
Date
:
14 Dec 99 (Deposition) - 20 Dec 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha-Beta Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Kotsonis, L. G. Frohlich, C. S. Raman, H. Li, M. Berg, R. Gerwig, V. Groehn, Y. Kang, N. Al-Masoudi, S. Taghavi-Moghadam, D. Mohr, U. Munch, J. Schnabel, P. Martasek, B. S. Masters, H. Strobel, T. Poulos, H. Matter, W. Pfleiderer, H. H. Schmidt
Structural Basis For Pterin Antagonism In Nitric-Oxide Synthase. Development Of Novel 4-Oxo-Pteridine Antagonists Of (6R)-5, 6, 7, 8-Tetrahydrobiopterin
J. Biol. Chem. V. 276 49133 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(6, 16)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
2a: 2,4-DIAMINO-6-PHENYL-5,6,7,8,-TETR... (AP6a)
2b: 2,4-DIAMINO-6-PHENYL-5,6,7,8,-TETR... (AP6b)
3a: CACODYLATE ION (CACa)
3b: CACODYLATE ION (CACb)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
5a: ETHYLISOTHIOUREA (ITUa)
5b: ETHYLISOTHIOUREA (ITUb)
6a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
7
Ligand/Ion
ACETATE ION
2
AP6
2
Ligand/Ion
2,4-DIAMINO-6-PHENYL-5,6,7,8,-TETRAHYDROPTERIDINE
3
CAC
2
Ligand/Ion
CACODYLATE ION
4
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
ITU
2
Ligand/Ion
ETHYLISOTHIOUREA
6
ZN
1
Ligand/Ion
ZINC ION
[
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]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:252 , ASN A:368 , ARG A:374 , HOH A:1888
BINDING SITE FOR RESIDUE ACT A 1850
02
AC2
SOFTWARE
ARG A:367 , AP6 A:1660 , HOH A:2041
BINDING SITE FOR RESIDUE ACT A 1855
03
AC3
SOFTWARE
GLY A:188 , TRP A:358 , SER A:428 , HOH A:1869 , HOH A:2013 , HOH A:2014
BINDING SITE FOR RESIDUE ACT A 1860
04
AC4
SOFTWARE
TRP A:324 , CYS A:384 , LYS A:438 , ARG A:440 , GLY A:441 , HOH A:1882
BINDING SITE FOR RESIDUE CAC A 950
05
AC5
SOFTWARE
GLN B:249 , ARG B:252 , ASN B:368 , ARG B:374 , HOH B:2886
BINDING SITE FOR RESIDUE ACT B 2850
06
AC6
SOFTWARE
ARG B:367 , AP6 B:2660 , HOH B:2930 , HOH B:2997
BINDING SITE FOR RESIDUE ACT B 2855
07
AC7
SOFTWARE
TRP B:358 , VAL B:420 , SER B:428 , HOH B:3060 , HOH B:3061
BINDING SITE FOR RESIDUE ACT B 2860
08
AC8
SOFTWARE
ASP A:398 , ILE A:454 , SER A:455 , ILE B:454 , SER B:455
BINDING SITE FOR RESIDUE ACT B 2870
09
AC9
SOFTWARE
TYR B:83 , TRP B:324 , CYS B:384
BINDING SITE FOR RESIDUE CAC B 950
10
BC1
SOFTWARE
CYS A:96 , CYS A:101 , CYS B:96 , CYS B:101
BINDING SITE FOR RESIDUE ZN A 900
11
BC2
SOFTWARE
TRP A:180 , ARG A:185 , CYS A:186 , SER A:228 , PHE A:355 , SER A:356 , TRP A:358 , GLU A:363 , TRP A:449 , PHE A:475 , TYR A:477 , AP6 A:1660 , ITU A:1800 , HOH A:1863 , HOH A:1871 , HOH A:1903 , HOH A:2079
BINDING SITE FOR RESIDUE HEM A 1500
12
BC3
SOFTWARE
TRP B:180 , CYS B:186 , SER B:228 , PHE B:355 , SER B:356 , TRP B:358 , GLU B:363 , TRP B:449 , TYR B:477 , AP6 B:2660 , ITU B:2800 , HOH B:2871 , HOH B:2877 , HOH B:2879 , HOH B:2992
BINDING SITE FOR RESIDUE HEM B 2500
13
BC4
SOFTWARE
SER A:104 , VAL A:106 , ARG A:367 , ALA A:448 , TRP A:449 , HEM A:1500 , ACT A:1855 , HOH A:1871 , HOH A:1881 , HOH A:1999 , TRP B:76 , TRP B:447 , PHE B:462 , HIS B:463 , GLU B:465
BINDING SITE FOR RESIDUE AP6 A 1660
14
BC5
SOFTWARE
PRO A:336 , VAL A:338 , TRP A:358 , GLU A:363 , HEM A:1500 , HOH A:2050
BINDING SITE FOR RESIDUE ITU A 1800
15
BC6
SOFTWARE
TRP A:76 , TRP A:447 , PHE A:462 , HIS A:463 , GLU A:465 , SER B:104 , ARG B:367 , ALA B:448 , TRP B:449 , HEM B:2500 , ACT B:2855 , HOH B:2877 , HOH B:2935
BINDING SITE FOR RESIDUE AP6 B 2660
16
BC7
SOFTWARE
PRO B:336 , VAL B:338 , TRP B:358 , TYR B:359 , GLU B:363 , HEM B:2500 , HOH B:2957
BINDING SITE FOR RESIDUE ITU B 2800
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: NOS (A:185-192,B:185-192)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NOS
PS60001
Nitric oxide synthase (NOS) signature.
NOS3_BOVIN
185-192
2
A:185-192
B:185-192
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1dmka_ (A:)
1b: SCOP_d1dmkb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Superfamily
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Family
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Protein domain
:
Nitric oxide (NO) synthase oxygenase domain
(298)
Cow (Bos taurus) [TaxId: 9913]
(85)
1a
d1dmka_
A:
1b
d1dmkb_
B:
[
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]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1dmkA03 (A:314-336,A:359-424)
1b: CATH_1dmkB03 (B:314-336,B:359-424)
2a: CATH_1dmkA01 (A:84-201,A:228-238,A:342-356,A:426-450)
2b: CATH_1dmkB01 (B:84-201,B:228-238,B:342-356,B:426-450)
3a: CATH_1dmkA02 (A:202-227,A:242-313,A:477-481)
3b: CATH_1dmkB02 (B:202-227,B:242-313,B:477-481)
View:
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Bovine Endothelial Nitric Oxide Synthase Heme Domain; Chain: A,domain 3
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 3
(105)
Cattle (Bos taurus)
(38)
1a
1dmkA03
A:314-336,A:359-424
1b
1dmkB03
B:314-336,B:359-424
Topology
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
Cattle (Bos taurus)
(38)
2a
1dmkA01
A:84-201,A:228-238,A:342-356,A:426-450
2b
1dmkB01
B:84-201,B:228-238,B:342-356,B:426-450
Topology
:
Nitric Oxide Synthase;Heme Domain; Chain A, domain 2
(105)
Homologous Superfamily
:
Nitric Oxide Synthase;Heme Domain;Chain A domain 2
(105)
Cattle (Bos taurus)
(38)
3a
1dmkA02
A:202-227,A:242-313,A:477-481
3b
1dmkB02
B:202-227,B:242-313,B:477-481
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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